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FlyWire Codex Workshop

28 Oct 2025

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>53,000 Codex Users

1,502,911 searches

Mar 22, 2023 to Sep 21, 2025

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Top 10,000: >18

Top 1,000: >469

Top 100: >6,613

How many queries does it take to make it to the Codex 100?

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Queries & Resources

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Connectivity & Pathways

  • Normalised pathway analyses (% of recipient’s total input).
    • Coming soon�

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Visualization & Interface

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Advanced Analysis

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Datasets & Integration

  • Bridging Codex datasets (FlyWire, BANC, MANC, MCNS).
    1. https://codex.flywire.ai/app/cell_type_counts?dataset=fafb
    2. Also see cross-dataset links in search results�
  • Open-source availability?
  • Access all connectomes in one place, even raw EM + Integrate NT/receptor data with morphology and connectivity. Can it be used for H01 and Fish1 datasets?
    • That’s our mission�