From Petri dish to Public Health
Department of Medical Microbiology & Parasitology | Faculty of Basic Clinical Sciences
College of Health Sciences | Usmanu Danfodiyo University, Sokoto, Nigeria
55th Inaugural Lecture
31st July 2025
The Odyssey of a Sahelian Microbial Pathologist
Professor Mohammed Yahaya
MBBS (Zaria); MPH (Field Epid); MBA (Hospital Admin); FMCPath; FWACP (LabMed)
Protocol
"Distinguished ladies and gentlemen, Good day!"
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بِسْمِ اللَّهِ الرَّحْمَٰنِ الرَّحِيمِ
وَمَنْ أَحْيَاهَا فَكَأَنَّمَا أَحْيَا النَّاسَ جَمِيعًا
“And whoever saves one life, it is as if he has saved all of mankind.”
- (Qur’an 5:32)
Over the next one hour, 100 pages and 50 slides, I will share how my early struggles forged a career in Clinical Microbiology, Infectious Disease and Public Health
Preamble
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Choice of Title
The Odyssey of a Sahelian Microbial Hunter: From Petri Dish to Public Health
The Story of a Microbial Odyssey from Petri Dish to Public Health to reveal the Microcosm within us
A Sahelian Microbial Pathologist: Navigating through Public Health for Patient Safety
Daring the Unseen: From Petri Dish to Public Health
The Hidden Symphony of Microbes, Man, and the Environment in a Delicate Dance
Invisible Foes, Invisible Allies, The Microbiome and Human Health
Finding Harmony: A Microbiologist's Journey Between People and Pathogens
Invisible Titans: How Microbes Dictate the Fate of Health and Environment
Unraveling the Microbial Tapestry: A Quest for Human Well-being
Our Interconnected Destiny with the Microbial World
The Dance of Life between Microbes, Our Environment, and the Quest for Public Health
Guardians of the Microbial Realm: A Battle for Balance in Public Health
In the quest of coming up with this title, I have considered several other titles to coin my Academic Journey;
I finally settled on…
“The Odyssey of a Sahelian Microbial Pathologist: From Petri Dish to Public Health”
Award from Katsina on 2nd Best SSCE
My Parent & Siblings, 43 years ago
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SECTION I: EARLY LIFE, NOMADIC BACKGROUND AND STRUGGLE FOR A CAREER
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SECTION II: THE INTERSECTION BETWEEN CLINICAL MICROBIOLOGY, INFECTIOUS DISEASES AND PUBLIC HEALTH
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What is Laboratory Medicine?
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The Role and Scope of Clinical Microbiologist /Microbiology
Prof. Rasheed Ajani Bakare (Doyen of Nigerian Microbiology) and His Illustrious Mentee, Prof. M.M. Manga
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Understanding Infectious Diseases
Caused by bacteria, viruses, fungi, parasites, or prions
Range from mild to life-threatening
Reflect the dynamic interaction between host immunity and microbial evolution
Infectious diseases are central to both clinical and public health domains
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Public Health as a Broader Lens
Epidemiology & Surveillance
Health Policy & Systems
Environmental Health
Global Health Security
Health Promotion & Behavioral Science
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The Power of Integration: The COVID-19 Example
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The Microbial World
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Antimicrobial Resistance – A Global to Local Threat
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Classification of Diseases Across Medical Disciplines
Infectious ≠ Communicable
Classification Approaches
Key Insights
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Classifications of Infectious Diseases
PROFESSION | CLASSIFICATION | ANTHRAX | CHOLERA | INFLUENZA |
Clinician | By Organ System Affected | Cutaneous | Diarrheal Disease | Respiratory Disease |
Pulmonary | ||||
Gastrointestinal | ||||
Clinical Microbiologist | By Pathogenic Characteristics | Gram-positive, non-motile bacillus (Bacillus anthracis) | Gram-negative, motile bacillus (Vibrio cholerae) | Enveloped, ssRNA virus (Orthomyxoviridae) |
Epidemiologist | By Transmission & Reservoir | Direct contact (animals) | Waterborne (contaminated water) | Airborne droplets (human-to-human) |
Airborne (spores) | ||||
Foodborne (meat) |
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The Epidemiologic Triad: Understanding Disease Transmission Through a Classic Model
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The Epidemiologic Triad
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Measures of Disease Severity and Impact:
Infectivity, Pathogenicity & Virulence
Infectivity refers to an agent’s ability to establish infection; calculated as the proportion of exposed individuals who become infected
Pathogenicity measures how often an infection leads to observable clinical disease
Virulence describes the severity of illness or likelihood of death once infection occurs; measured as the case fatality rate (CFR)
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Ranking of Infection by Infectivity, Pathogenicity, and Virulence
SEVERITY | INFECTIVITY | PATHOGENICITY | VIRULENCE |
High | Smallpox | Smallpox | Rabies |
Measles | Rabies | Smallpox | |
Chicken pox | Measles | Tuberculosis | |
| Chicken pox | Leprosy | |
| Common cold | | |
Intermediate | Rubella | Rubella | Poliomyelitis |
Mumps | Mumps | Measles | |
Common cold | | | |
Low | Tuberculosis | Poliomyelitis | Measles |
| Tuberculosis | Chicken pox | |
Very low | Leprosy | Leprosy | Rubella |
| | Common cold |
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Breaking the “chain of infection” to controlling the spread of Infectious Diseases
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Strengthening Public Health Through the Infectious Disease Surveillance and Response (IDSR) Framework in Nigeria
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Historical Context, Evolution, Current Schedule, Challenges and Future Direction of Nigeria’s Immunization Program
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Historical Context, Evolution, Current Schedule, Challenges and Future Direction of Nigeria’s Immunization Program (II)
BHCPF: Basic Health Care Provision Fund
sWAP: Sector-Wide Approach
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SECTION III: MY CONTRIBUTION TO CLINICAL MICROBIOLOGY, INFECTIOUS DISEASES & ADMINISTRATION IN NIGERIA
MY EARLY CLINICAL JOURNEY:
THE BIRTH OF A MICROBIOLOGIST:
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Case 1: A Case That Changed Me - Leprosy & HIV
Leonine facie with hypo/hyperpigmented patches seen four weeks into admission
Numerous globi seen following modified Ziehl neelsen-stained nasal smear (×1000)
Photomicrograph showing resistant genes
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Case 2: The ICU Wake-Up Call: An ESBL Alert
Distribution of ESBL Genes (SHV, TEM and CTX-M) among ESBL positive Isolates of Escherichia coli and Klebsiella pneumoniae
Percentage
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A New Beginning in Sokoto
MY MOTHER’S PLEA AND A NEW BEGINNING:
BUILDING SYSTEMS IN SOKOTO:
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Letter of Commendation from UMTH as Acting HOD in 2013
Letter of Commendation from UDUTH in 2020
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Case 3: A Boy, an Abattoir & a Missed Diagnosis
Illustration of the progression of cutaneous lesions on the left leg, including a malignant pustule with a developing satellite lesion to a vesiculobullous eruptions and finally a marked brawny oedema of the lower limb
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Case 4: A Girl’s Silent Struggle - Fungal Mycetoma
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National Mycology Contributions
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Distribution of Cryptococcal antigenemia across the six geopolitical regions of Nigeria
Distribution of Histoplasmosis from urine from five geopolitical regions of Nigeria
Geopolitical Zone | No. Enrolled | ART Naive (%) | ART Experienced (%) | CrAg-positive (%) | Percentage Contribution to CrAg |
North-West | 210 | 86 (41.0) | 124 (59.0) | 7 (3.3) |
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Kano | 100 | 48 (48.0) | 52 (52.0) | 2 (2.0) | 4.5 |
Sokoto | 110 | 38 (34.5) | 72 (65.5) | 5 (4.5) | 11.4 |
North-East | 75 | 22 (29.3) | 53 (70.7) | 0 (0) | 0 |
Yola | 75 | 22 (29.3) | 53 (70.7) | 0 (-) | 0 |
North-Central | 138 | 63 (45.7) | 75 (54.3) | 3 (2.2) | 6.8 |
Jos | 138 | 63 (45.7) | 75 (54.3) | 3 (2.2) | 6.8 |
South-West | 279 | 125 (44.8) | 154 (55.2) | 19 (6.8) | 34.1 |
Ibadan | 122 | 39 (32.0) | 83 (68.0) | 15 (12.3) | 34.1 |
Lagos | 32 | 7 (21.9) | 25 (78.1) | 2 (6.3) | 4.5 |
Shagamu | 125 | 79 (63.2) | 46 (36.8) | 2 (1.6) | 4.5 |
South-East | 92 | 45 (48.9) | 47 (51.1) | 2 (2.2) | 4.5 |
Anambra | 92 | 45 (48.9) | 47 (51.1) | 2 (2.2) | 4.5 |
South-South | 320 | 61 (19.1) | 259 (80.9) | 13 (4.1) | 11.1 |
Benin City | 125 | 5 (4.0) | 120 (96.0) | 5 (4.0) | 11.4 |
Calabar | 83 | 12 (14.5) | 71 (85.5) | 4 (4.8) | 9.1 |
Port Harcourt | 112 | 44 (39.3) | 68 (60.7) | 4 (3.6) | 9.1 |
Total | 1114 | 402 (36.1) | 712 (63.9) | 44 (3.9) | 100 |
Variable/ Geopolitical zones | No. (%) participants | No. Histoplasmosis urine Ag+/total no. (%) |
North Central | 355 (35.9) | 20/355 (5.6) |
North West | 100 (10.1) | 6/100 (6.0) |
South East | 44 (4.5) | 3/44 (6.8) |
South South | 303 (30.7) | 23/303 (7.6) |
South West | 186 (18.8) | 24/186 (12.9) |
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Case 5: A Woman Bleeds from Everywhere
– Disseminated Gonococcal Infection (DGI)
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Case 6: The Silent Outbreak - Acinetobacter baumannii
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Case 7: Discovery of New Pathogens
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SECTION IV: MY CONTRIBUTION TO FIELD EPIDEMIOLOGY, SURVEILLANCE, OUTBREAK INVESTIGATION, IMMUNIZATION, RESEARCH GRANTS, RESEARCH COLLABORATIONS AND GLOBAL HEALTH
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Arboviral Outbreak in Sokoto
Mr. Vice Chancellor, Ladies & Gentlemen;
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Polio Eradication Efforts
(AFENET-NSTOP)
Hepatitis B Birth Dose Improvement Project (AFENET/US CDC)
Receiving Yellow Fever Vaccine during Field Supervision
Award from the US CDC
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Zero Dose Learning Hub (ZDLH)
| Used for state and national advocacy to increase RI funding |
| Sokoto State: Findings led to 2025 RI budget revision due to high ZD rates in Tambuwal and Wamakko LGAs |
| Borno State: CSOs leveraged data to advocate for increased outreach funding & improved access in underserved areas |
| Commitment from the Nigerian Senate to increase RI funding |
| Attahiru A, Mohammed Y, et al. Decentralized Immunization Monitoring: Lessons Learnt from a Pilot Implementation in Kumbotso LGA, Kano State, Nigeria. Vaccines. 2025; 13(7):664. ISSN 2076393X https://doi.org/10.3390/vaccines13070664 |
FINDINGS
KNOWLEDGE TRANSLATION
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Findings: Zero Dose Children from Four States
Sokoto, Kano, Borno and Bauchi, August 2024
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With Senate Chief Whip- Senator Monguno with ZDLH team
With Dr Heidi (Gavi) and
my Zero Dose Learning Hub family, AFENET
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With Dr Patrick Nguku, Dr Ndadilnasiya Endie Waziri, Dr Aminu Garba Magashi
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Scholarships and Research Grants I Won
S. No. | PROJECT TITLE | FUNDING AGENCY | ROLE | CURRENCY | YEAR |
1 | Metagenomic study of pyrexia of unknown origin | TETFund NRF 2023 | Co-PI | Naira | 2024 |
2 | Detection of colistin-resistant Enterobacterales | TETFUND IBR - FUHS Azare | Co-PI | Naira | 2023 |
3 | Molecular epidemiology of recurrent cholera outbreaks | TETFund NRF 2021 | Principal Investigator | Naira | 2021 |
4 | LAMP & IGRA for Tuberculosis diagnosis | TETFund NRF 2021 | Co-PI | Naira | 2021 |
5 | Hepatitis B vaccine non-response study | TETFund NRF 2021 | Co-PI | Naira | 2021 |
6 | Recombinant DNA vaccine for Lassa fever | TETFund NRF | Co-PI | Naira | 2021 |
7 | UNITY Global Study on COVID-19 in HCWs | 54Gene | Principal Investigator | USD | 2021 |
8 | Group B Streptococcal infections in pregnancy | TETFund IBR | Co-PI | Naira | 2020 |
9 | MDR Mycobacterium tuberculosis study | TETFund IBR | Co-PI | Naira | 2020 |
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Certificate and Award
Certificate as the Highest Grant Award (2019-2023), Usmanu Danfodiyo University, Sokoto
Certificate as the Highest Grant Award (2019-2023), Usmanu Danfodiyo University, Sokoto
My International Grants & Research Collaboration
S. No. | Project Title | Funding Agency | Role | Year |
1 | Reducing Mortality in Adults with Advanced HIV Disease (REVIVE) | Population Health Research Institute, Canada | Site Investigator | 2024 |
2 | Borrelia diagnostics and fever of unknown origin (Nigeria-Germany) | BVGH / GIA | Co-PI | 2024 |
3 | Host-microbiome and Aetiology of Noma disease | King's College London | Principal Investigator | 2023 |
4 | Zero Dose Learning Hub (ZDLH) - Nigeria | Gavi | Project Coordinator | 2023 |
5 | Hepatits B Birth dose & Maternal Tetanus-Diphtheria Improvement Project in Adamawa and Enugu State | US CDC | Consultant | 2022 |
6 | Burden of Antibiotic Resistance from Neonates in Developing Societies (BARNARDS) Phase II | Ineos Oxford Institute | Site Investigator | 2022 |
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Global Public Health (I)
Africa HPV Forum, Addis Ababa
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20th ICID Cape Town as a panelist
Global Public Health (II)
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Global Public Health (III)
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MESSAGE TO MENTEES
(Present & Future)
"وَإِذْ تَأَذَّنَ رَبُّكُمْ لَئِن شَكَرْتُمْ لَأَزِيدَنَّكُمْ"�(سورة إبراهيم، الآية 7)
"And when your Lord proclaimed, ‘If you are grateful, I will certainly give you more."—Surah Ibrahim (14:7)
"حَتَّىٰ إِذَا بَلَغَ أَشُدَّهُ وَبَلَغَ أَرْبَعِينَ سَنَةً قَالَ رَبِّ أَوْزِعْنِي أَنْ أَشْكُرَ نِعْمَتَكَ الَّتِي أَنْعَمْتَ عَلَيَّ وَعَلَىٰ وَالِدَيَّ…"�(سورة الأحقاف، الآية 15)
"…When he reaches maturity at forty years, he says, ‘My Lord, inspire me to always be grateful for Your favors which You have blessed me and my parents with…’"—Surah Al-Ahqaf (46:15),
Guiding Principles in Life
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Conclusion
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Acknowledgements
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WITH PROFOUND GRATITUDE
To my esteemed mentors and guiding lights—
Prof. L.S. Bilbis and Prof. Sule Saidu; THANK YOU for shaping my mind, fueling my curiosity, and inspiring excellence at every turn.
Your wisdom echoes in every achievement.
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GUIDED BY GREATNESS
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MY PROFESSIONAL COMPASS
Special appreciation goes to my mentors and inspirations—Dr. Patrick Nguku, Dr. Ndadilnasiya Waziri, Dr. Aminu Magashi, and Dr. Simon Antara; for their guidance and impact on my professional growth
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ROOTED IN FAITH, NURTURED BY FAMILY
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References (Selected)
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Dr. Yahaya Mohammed is an experienced Medical Doctor specializing in Clinical Microbiology and Infectious Diseases, with a strong background as a Laboratory Physician and International Field Epidemiologist. Passionate about One Health and improving healthcare access, Dr. Mohammed is dedicated to advancing quality care delivery systems through research, education, and outbreak response.
Prof. Yahaya Mohammed
MBBS (Zaria); MPH (Field Epid); MBA; FMCPath; FWACP (LabMed)
Faculty of Laboratory Medicine | Medical Microbiology & Parasitology
Skilled in clinical research, infectious disease surveillance, outbreak investigations, teaching, and mentorship, he holds a Master of Public Health (MPH) from Ahmadu Bello University, Zaria, Nigeria, complemented by an MBA and distinguished fellowships in Medical Laboratory Medicine (FMCPath, FWACP).
Currently serving as Faculty in Laboratory Medicine, with expertise in Medical Microbiology & Parasitology, Dr. Mohammed combines clinical excellence with public health leadership to drive impactful health solutions.
A researcher, educator, and advocate for equitable healthcare.
THANK YOU
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Dr. Yahaya Mohammed is an experienced Medical Doctor specializing in Clinical Microbiology and Infectious Diseases, with a strong background as a Laboratory Physician and International Field Epidemiologist. Passionate about One Health and improving healthcare access, Dr. Mohammed is dedicated to advancing quality care delivery systems through research, education, and outbreak response.
Prof. Yahaya Mohammed
MBBS (Zaria); MPH (Field Epid); MBA; FMCPath; FWACP (LabMed)
Faculty of Laboratory Medicine | Medical Microbiology & Parasitology
Skilled in clinical research, infectious disease surveillance, outbreak investigations, teaching, and mentorship, he holds a Master of Public Health (MPH) from Ahmadu Bello University, Zaria, Nigeria, complemented by an MBA and distinguished fellowships in Medical Laboratory Medicine (FMCPath, FWACP).
Currently serving as Faculty in Laboratory Medicine, with expertise in Medical Microbiology & Parasitology, Dr. Mohammed combines clinical excellence with public health leadership to drive impactful health solutions.
A researcher, educator, and advocate for equitable healthcare.
THANK YOU
ANY QUESTIONS?
+234 803 686 7478
yahyakt@yahoo.com