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Scripting in Neuroimaging

Student Research Group Neurology

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Shell basics

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Shell scripting basics

Shell scripting for beginners

Advanced Bash Scripting Guide

Shell scripting basics

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FSL

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FSL Course offline

https://fsl.fmrib.ox.ac.uk/fslcourse/

Scripting tutorial https://fsl.fmrib.ox.ac.uk/fslcourse/lectures/scripting/index.html

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Advanced and nifty bash functions

awk oneliners

awk oneliners #2

sed intro #1

sed micro-primer

sed oneliners

regular expressions

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Cloud and Computational Environments

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ANTS and Freesurfer