Optimizing Phylogenetic Reconstruction for Digital Evolution
Vivaan Singhvi, Joey Wagner, Emily Dolson,
Luis Zaman, Matthew Andres Moreno
Why Digital Evolution?
(Dolson and Ofria 2019)
How Digital Evolution Works
(Cerebras Systems)
Problem Statement
What’s a Phylogeny?
Genetic Information
A
1
0
1
B
1
0
0
Generation
1
2
3
4
5
1
0
1
1
C
0
0
1
The Algorithm
0
1
1
1
A
B
1
1
0
0
1
2
3
4
5
0
1
2
3
4
5
The Algorithm
0
1
1
1
A
B
1
1
0
0
0
0
0
B
1
1
2
3
4
5
1
2
3
4
5
The Algorithm
0
1
1
1
A
0
0
B
1
1
2
3
4
5
The Algorithm
0
1
0
1
0
1
A
B
C
1
1
1
0
0
1
2
3
4
5
1
2
3
4
5
The Algorithm
0
1
0
1
0
1
A
B
C
1
1
1
0
0
1
2
3
4
5
1
2
3
4
5
?
The Algorithm
0
1
0
1
0
1
A
B
C
1
1
1
0
0
1
2
3
4
5
1
2
3
4
5
0
The Algorithm
0
0
0
1
0
1
0
1
A
B
1
1
0
1
0
0
C
C
1
2
3
4
5
1
2
3
4
5
The Algorithm
0
0
0
1
0
1
0
1
A
B
1
C
1
2
3
4
5
The Problem
D
1
0
1
0
0
0
0
1
0
1
0
1
A
B
1
C
1
2
3
4
5
1
2
3
4
5
The Problem
D
1
0
1
0
0
0
0
1
0
1
0
1
A
B
1
C
1
2
3
4
5
1
2
3
4
5
The Problem
D
1
0
1
0
0
0
0
1
0
1
0
1
A
B
1
C
1
2
3
4
5
1
2
3
4
5
The Problem
D
1
0
1
0
0
0
0
1
0
1
0
1
A
1
C
1
2
3
4
5
1
2
3
4
5
0
B
D
The Problem
D
1
0
1
0
0
0
0
1
0
1
0
1
A
B
1
C
1
2
3
4
5
1
2
3
4
5
The Problem
0
0
1
0
1
0
1
A
1
2
3
4
1
1
1
1
0
0
1
1
0
0
6
7
8
9
5
The Problem
0
0
1
1
1
1
0
0
1
1
1
0
B
C
99
100
101
102
103
104
D
1
…
1
0
1
2
3
104
The Problem
0
0
1
1
1
1
0
0
1
1
1
0
B
C
0
0
1
1
1
1
0
0
1
1
0
0
F
G
99
100
101
102
103
104
D
1
…
1
0
1
2
3
104
The Problem
0
0
1
1
1
1
0
0
1
1
1
0
B
C
D
1
...
1
0
0
0
1
1
1
1
0
0
1
1
0
0
F
G
E
1
...
1
0
H
1
...
1
0
I
1
...
1
0
J
1
...
1
0
K
1
...
1
0
L
1
...
1
0
M
1
...
1
0
99
100
101
102
103
104
The Solution
0
1
0
1
1
0
1
0
A
B
C
0
D
1
0
1
0
1
2
3
4
5
1
2
3
4
5
The Solution
0
1
0
1
1
0
1
0
A
B
C
0
D
1
0
1
0
1
2
3
4
5
1
2
3
4
5
The Solution
0
1
1
0
1
0
A
C
0
B
1
0
1
2
3
4
5
D
1
0
1
0
1
2
3
4
5
The Solution
0
1
1
0
1
0
A
C
B
1
0
0
D
1
0
1
0
1
2
3
4
5
1
2
3
4
5
The Solution
B
D
0
1
1
0
1
0
A
C
1
0
0
1
2
3
4
5
D
1
0
1
0
1
2
3
4
5
The Solution
B
D
0
1
1
0
1
0
A
C
1
0
0
1
2
3
4
5
D
1
0
1
0
1
2
3
4
5
Results
Results
Results
Results
Reconstruction Demonstration
Significance
Image Attributions
https://www.vecteezy.com/free-vector/corona
https://spectrum.ieee.org/cerebras-wafer-scale-engine
https://pixabay.com/vectors/cpu-processor-intel-amd-chip-152656/
https://www.azolifesciences.com/article/What-is-Molecular-Phylogenetics.aspx
Thank You!
Contact me:
singhvi.vivaan@gmail.com
Dr. Luis Zaman
This project is supported by the Eric and Wendy Schmidt AI in Science Postdoctoral Fellowship, a Schmidt Sciences program.
Dr. Emily Dolson
Joey Wagner
Connor Yang (UROP)
Vivaan Singhvi (UROP)
Office of Advanced Scientific Computing Research (ASCR)
Award Number DE-SC0025634
Dr. Matthew Andres Moreno