1 of 13

Slideshow Template for Project Presentations

Data Analysis in Genome Biology - GEN242

Name of Group and Names of Presenters

June ?, 2026

GEN

242

2 of 13

Outline

Introduction

Methods

Results and Discussion

Conclusions

References

GEN242

3 of 13

Introduction

General overview of topic
Additional background information
...

GEN242

4 of 13

Objectives of Challenge Project

Short outline of goals

Brief overview of data used and corresponding publication

Overview of progress made so far

GEN242

5 of 13

Outline

Introduction

Methods

Results and Discussion

Conclusions

References

GEN242

6 of 13

Methods

Introduce important equations and methods used by study
Be able to explain underlying theory
Show code and functions you developed; can be in slides or showing Rmd/R scripts
...

GEN242

7 of 13

Outline

Introduction

Methods

Results and Discussion

Conclusions

References

GEN242

8 of 13

Results and Discussion

Summarize all important results
Include the most critical figures and tables generated by course project. Know the meaning of each of their components (e.g. what is plotted on x and y).
...

GEN242

9 of 13

Remaining Steps to Finish and Include in Report

Discuss what you will include in the final report.
Show rendered project report (HTML) with main sections included and some of the challenge project results.
...

GEN242

10 of 13

Outline

Introduction

Methods

Results and Discussion

Conclusions

References

GEN242

11 of 13

Conclusions

Remaining tasks to complete that will be included in final submission of project report.
Future outlook, etc
...

GEN242

12 of 13

Outline

Introduction

Methods

Results and Discussion

Conclusions

References

GEN242

13 of 13

References

Bray NL, Pimentel H, Melsted P, Pachter L (2016) Near-optimal probabilistic RNA-seq quantification. Nat Biotechnol. doi: 10.1038/nbt.3519

Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL (2013) TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol 14: R36

Langmead, B, Trapnell, C, Pop, M, Salzberg, S L (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Genome Biol, 10:. URL http://www.hubmed.org/display.cgi?uids=19261174

Langmead B, Salzberg SL (2012) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Nat Methods, 9: 357-359 URL http://www.hubmed.org/display.cgi?uids=22388286

Liao, Y, Smyth, GK, Shi, W (2013) The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote Nucleic Acids Res 41, e108. URL http://www.ncbi.nlm.nih.gov/pubmed/23558742

GEN242