Welcome! �COVID-19 pathway analysis workshop
Nhung Pham
Department of Bioinformatics (BIGCAT), Maastricht Centre for Systems Biology (MACSBIO)
Maastricht University
5 July 2022
Who are we?
Organizers
Instructors
Susan Steinbusch-Coort
Martina Summer-Kutmon
Nhung Pham
Who are we?
Organizers
Instructors
Susan Steinbusch-Coort
Martina Summer-Kutmon
Nhung Pham
And you!
22 participants
ZonMw COVID19 project
The COVID-19 portal on WikiPathways
https://www.wikipathways.org/index.php/Portal:COVID-19
Viral entry and life cycle (WP5076, WP5113, WP5156, WP4883, WP4799)
Host immune response: type 1 IFN (WP4868), innate (WP5039), adaptive (b cells WP5218; t cells WP5098), complement (WP5148)
Viral- host responses (WP5145, WP5027, WP4884, WP4861, WP4936, WP4876, WP4877, WP5115)
Until 05-07-2022: 42 pathways
Others role of Vitamin D (WP5133), mRNA vaccine activation of dendritic cells (WP5187), linoleic acid metabolism (WP4853), other human coronaviruses (WP4880, WP4912)
COVID-19 Disease Map Project
Workshop information
Program
Day 1: Pathway curation
Program
Day 1: Pathway curation
Day 2&3: Pathway and network analysis
Today Program
10.00 - 10.30 | Welcome - introduction to the COVID-19 project and the workshop |
10.30 - 11.15 | Lecture: Introduction to pathway models (databases), WikiPathways and PathVisio |
11.15-12.00 | Hands-on - WikiPathways academy |
12.00-13.00 | Lunch |
13.00-16.00 | Hands-on: draw your own pathway Select one from our list or a pathway of your interest |
16.00 - 17.00 | Lecture: Ending with the importance of curation and Q&A |
17.00 - 21.00 | Social event & Dinner |
Questions?
Nhung Pham