Tools for systems biology modeling and data management
Date: 21st Sep 10:00 am – 23rd Sep 2020, 4:00pm
Location: Online course OR MPI Magdeburg, Sandtorstrasse 1, 39106 Magdeburg, Germany
During this 3-day course, attendees will learn basic techniques for modeling of biochemical networks including data access and storage due to the FAIR principles. The first day introduces principles of stoichiometric and constraint-based modeling coupled with hands on exercises using CellNetAnalyzer. The second day continues with kinetic modeling techniques which will be illustrated and exercised with COPASI. The third day SABIO-RK is used as a resource for kinetic data and FAIRDOM Hub/SEEK is introduced as a data and model management platform fitted to the needs of systems biologists. The hands on exercises throughout the three days will ensure that attendees become familiar with the software tools and with analyzing, creating, editing, importing, simulating and storing biochemical networks.
Ideally, we would like to hold this workshop at the location in Magdeburg. However, given the current situation, we might have to transform it into a virtual meeting (online course). We will inform you about the final decision by September 4. Please indicate below in the registration whether you would attend only the real course in Magdeburg / only the online course / or whether you could live with both of them.
Prerequisites: Some knowledge of mathematical modeling will be advantageous. The participants should bring their own laptop with MATLAB installed (if you do not have MATLAB please let us know during registration).
For more information see our course website: <
Would you participate in an in-person workshop, or do you prefer for it to be virtual only.
in-person workshop in Magdeburg, Germany
either is fine
Which modules would you like to attend. (limited to 20 participants per module)
CellNetAnalyzer (Mo, 21st of September)
COPASI (Tue, 22nd of September)
SABIO-RK / SEEK (Wed, 23rd of September)
The use of CellNetAnalyzer requires MATLAB, since this is a practical course, participants are expected to have installed MATLAB on their system.
I do own a MATLAB license
I do NOT own a MATLAB license
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