Tools for systems biology modeling and data management
Date: 27th April 10:00 am – 29th April 2020, 4:00pm
Location: MPI Magdeburg, Sandtorstrasse 1, 39106 Magdeburg, Germany
During this 3-day course, attendees will learn basic techniques for modeling of biochemical networks including data access and storage due to the FAIR principles. The first day SABIO-RK is used as a resource for kinetic data and FAIRDOM Hub/SEEK is introduced as a data and model management platform fitted to the needs of systems biologists.
The hands on exercises throughout the three days will ensure that attendees become familiar with the software tools and with analyzing, creating, editing, importing, simulating and storing biochemical networks. The second day introduces principles of stoichiometric and constraint-based modeling coupled with hands on exercises using CellNetAnalyzer. The third day continues with kinetic modeling techniques which will be illustrated and exercised with COPASI.
Prerequisites: Some knowledge of mathematical modeling will be advantageous. The participants should bring their own laptop with MATLAB installed (if you do not have MATLAB please let us know during registration).
For more information see our course website: <
The use of CellNetAnalyzer requires MATLAB, since this is a practical course, participants are expected to have installed MATLAB on their system.
I do own a MATLAB license
I do NOT own a MATLAB license
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