Application for Participation in June 19-21 2017 Genomics Hackathon at NYGC
Do you have a working knowledge of shell scripting?
Do you use any other programming languages?
What is the primary research question you work on?
Are you interested in working on a similar problem during this workshop?
Please tell us in 3-4 sentences why you want to participate.
Here are Some Approximate Project Titles (which are expected to evolve); which are you interested in working on?
Please check all that apply; note that "*" indicates the project is open to any information professionals, particularly librarians.
Expanding and publicizing a shiny app for visualization of protein correlation,
A pipeline for searching for virus-associated protein domains in NGS datasets
Association of somatic mutations with clinical outcomes
Simulation of tumor genomes
A public JBrowse database for all Staphylococcus aureus genomes
A pipeline for efficient partitioning of barcodes
Any new projects that may arise (please email us to propose one)
Plan an educational curriculum for training librarians and other information professionals to teach advanced concepts and skills in data discovery and retrieval*
Evaluation of mutation burden in cancer samples, and improve analysis based on specific cancer characteristics for better prediction of survival and response to immunotherapy
Creating a tool to list, download, or describe the data available for given partial or complete TCGA barcodes.
Developing a gRPC framework using ga4gh hts schemas for efficient streaming transfers
Refactoring implementations of common bioinformatics pipelines for scalability, using Nextflow and Docker
What is your email address?
What is your name?
What is your approximate geographic location?
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