Metadyn View questionnaire
How often you use MetadynView to visualize metadynamics data?
routinely, I use mostly MetadynView
time to time, I use MetadynView as well as other tools
I have tried MetadynView
How do you use/prefer to use MetadynView?
online at my own web installation
Are you satisfied with MetadynView?
I’m satisfied and I’m using it
I’m satisfied but I’m used to other tools
I’m satisfied but other tools are better
I’m not satisfied with some features
I’m completely dissatisfied
Are you satisfied with MetadynView documentation?
Which other tools you use to get free energy surfaces from HILLS files?
general mathematics or statistics packages (e.g. Matlab, R etc)
a homemade tool
Which current features of MetadynView you use/are interested to use?
visualization of 2D free energy surfaces
visualization of 1D free energy surfaces
matching points in the free energy surfaces with simulation snapshots
absolute bias potential / free energy measurement
free energy difference measurement
export to image
export to a matrix file (bias.txt)
Are you using MetadynView to make images for publications?
yes, I use/would use image output of the tool
yes, I use/would use a matrix output file (bias.txt) of the tool followed by finishing of image in other software
Which features you miss in MetadynView?
visualization of 3D free energy surfaces
user setting of ranges of CVs and free energy
synchronised visualization of trajectory
numeric input of simulation time (i.e. other than slider)
choice of color scales schemes
high resolution image output
better setup of image appearance (e.g. font size)
vector image output
support of other metadynamics packages
calculation of free energy surfaces from COLVAR files from unbiased simulations
other types of calculation of free energy surfaces (e.g. on-the-fly reweighing)
Would you share your HILLS files from published simulations in a public database with visualization by MetadynView?
yes, I would like to put my HILLS files into a public database
Do you produce or do you plan to produce in near future some extremely large HILLS files that would require use of big data tools (e.g. Hadoop or Spark) to calculate free energy surfaces?
yes, I'm producing/plan to produce extremely large HILLS files
Would you use MetadynView as an application for mobile phones or tablet PCs?
yes, for Android
yes, for Apple
yes, for other OS
Do you have some other suggestions, comments etc?
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