In this Call4Help tool webinar we will present TissUUmaps, a browser-based tool for GPU-accelerated visualization and interactive exploration of millions of datapoints overlaying tissue samples. Users can visualize markers and regions, explore spatial statistics and quantitative analyses of tissue morphology, and assess the quality of decoding in situ transcriptomics data. TissUUmaps provides instant multi-resolution image viewing, can be customized, shared, and also integrated in Jupyter Notebooks.
TissUUmaps was created in collaboration between BIIF and the Wählby lab. You can read more about it and test the software on its web page: https://tissuumaps.github.io/
During the seminar, we will go through basic usage of TissUUmaps: installation, loading images, markers and regions, change visualization settings, and how to load / save / share projects.
Christophe Avenel (BIIF)
Time and location:
March 1st, 2022, 09:00-10:00 (CET)
zoom (link will be sent to registered users)
Contact for further questions:
BioImage Informatics Facilitybiif@scilifelab.sehttps://www.scilifelab.se/facilities/bioimage-informatics/