CKD-db-imode
http://www.padb.org/ckddb/
Demographics
DEMOGRAPHREF
sample identifier/Internal identifier (combination of patient ID and date and sample type, e.g. "IMD000001_001" or any other unique ID)
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EXPREF
identifier of experiment, can contain multiple entries separated by "|"
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species
GroupSize N
cohort size
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Group modification, modulation, interference protocol
description of disease induction, etc.
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Group classifier
healthy, cancer, diabetic
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patient ID
suggested format for unique patient ID: IMD000001
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external patient ID
external patient ID sent by Skopje
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label
entry relation; baseline, follow-up, 6/12/18/24/30/36 month follow-up, death
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sampling date
MM
/
DD
/
YYYY
age (years)
number (years; use decimal/fractional)
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gender
number (female=0, male=1, all others=2)
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clinical history
hypertension, cancer, etc.
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Histology
histology results
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Diagnosis method
description of diagnosis method to derive a decision (e.g. biopsy)
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etiology of disease
diabetic, glomerulopathy,...
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height (m)
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weight (kg)
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BMI
body mass index
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BSA
body surface area
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systolic BP (mmHg)
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diastolic BP (mmHg)
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mean BP
blood pressure (BP)
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non-/specific drugs (ACE, ARB, pentoxifillin, aspirin, allopurinol)
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S-creatinine (mmol/l)
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S-urea (mmol/l)
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S-albumin (g/dl)
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24h urine output (ml)
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U-albumin (g/l)
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U-protein (g/l)
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U - creatinine (mmol/l)
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UACR (mg/g)
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UCR
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LDL (mmol/l)
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cholesterol (mmol/l)
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uric acid (mmol/l)
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sodium (mmol/l)
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potassium (mmol/l)
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calcium (mmol/l)
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phosphate (mmol/l)
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alkaline phosphatase (U/L)
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PTH (pg/ml)
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GFR (Cockcroft-Gault equation)
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GFR (abbreviated MDRD)
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GFR (extended MDRD)
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GFR (CKD epi )
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CKD stage
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GFR decline
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GFR slope
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UACR changes from baseline
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UCR changes from baseline
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Doubling of serum creatinine or need for dialysis or transplantation
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Cohort group (non-/progressors )
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Changes in the score of the renal scarring parameters
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clinical intervention
clinical procedure
dialysis,surgery,...
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surgical reason
cancer, blood loss, ...
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surgical procedure
name of procedure
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sample type
urine, plasma, kidney section,...
sample quantity
1 ml, 5 kg, ...
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sample procedure
kidney tissue is nephrectomy or biopsy
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sample storage
fresh frozen tissue, FFPE, ...
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sample location
where held
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sample dispersion
nested entry, use the following per entry: [Shipping; Analysis; etc.|when (date)|to (who (MOS, ATH,...) received/analysed the sample)|quantity (ml, block, cryosections)|...)|note//]
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notes
free text for general notes
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