De novo design of proteins using Rosetta and Alphafold 2
Event Timing: Thursday 23. 6. 2022
Event Address: Great Lecture Hall, National Institute of Chemistry, Hajdrihova 19, Ljubljana, Slovenia
More info:

**Please read the below invitation for more information (program, prerequisites).**

Invitation to Crash Course in de novo protein design using Rosetta in Alphafold 2:

Vabilo na delavnico o de novo načrtovanju proteinov z uporabo Rosetta in AlphaFold 2:


Protein design is of great technological importance and can solve many biomedically relevant challenges. Examples include new therapeutic agents (COVID-19 inhibitors, COVID-19 vaccines, flu inhibitors), nanomaterials (cages, layers, fibers) and sensors. Are you interested in protein structure and would like to know more about the magic of de novo design? Then you are the perfect candidate!

The workshop is set up as a “crash course” in protein design, highlighting what is possible with current technology. Participants will learn how to build a four-helix bundle protein from scratch (i.e. using only mathematics). At the end of the workshop, they will obtain a sequence for the protein that folds into the designed structure. The basics of Rosetta, parametric backbone design, design of loops and design of side chains will be introduced. Alphafold 2 and it’s uses will also be presented.
The workshop will be led by dr. Ajasja Ljubetič, a Marie Skłodowska-Curie Fellow that has trained in the Baker lab (Seattle, USA), one of the most famous protein design labs in the world.  

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Protein structure
Protein design
Alphafold 2
Unix command line
Cluster computing
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