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Microarray Dataset Description Form
Use this form to describe microarray data provided for loading into EuPathDB databases.
What is the title of your experiment?
The title should provide a clear summation of the experiment.
Provide a brief description of this data.
How would you like to describe your dataset to people visiting the EuPathDB sites?
Provide the name and contact information for the investigator(s) involved in this project.
Indicate the Principle Investigator, primary author and collaborators. Provide a name, address, phone number and email for each. These people will be listed in the data set description.
Is this data associated with a Publication?
Please provide the PMID.
What is the name of the organism that is the source of the samples?
Please use the full scientific name and strain.
Please list samples analyzed for this dataset.
What experimental factors varied between samples?
Provide a brief overview of the experimental design or strategy explaining factors like incubation time, treatment, genetic modification, life stage...
What were the protocols or kits used to extract RNA and label your samples?
Arrays and Hybridization
Describe the microarray that was used.
Did you use a spotted glass slide or high density oligonucleotide array? What portion of the genome does it cover? etc.
What equipment and software was used to scan the arrays and generate the data?
Analysis and Results
List the data files that were generated and indicate how they relate to the samples described above.
(raw CEL files and normalized data files)
What software and methods were used to generate gene expression values and normalize the values?
Has this data been submitted to an archive - GEO or similar?
Please provide accession numbers.
Which genome should this data be aligned to?
Please use the full scientific name and strain, e.g. Toxoplasma gondii ME49.
Is there additional information that is important for understanding this data and how to analyze it?
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