Join the ENIGMA CNV working group

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Hello potential ENIGMA-CNV working group members!

We greatly value your participation. Please tell us a bit about your cohort so we can better help assist you as you work through the processing and analysis protocols.

Unfortunately, we do not receive an automatic notification when people fill the form out, so please send a separate e-mail to: i.e.sonderby@medisin.uio.no after filling out the form.

Thank you and best wishes
The ENIGMA-CNV team

PI-name *

PI email address *

Cohort name *

Names and emails of other key personnel in group

Preferably the people who should be on the e-mail list of the ENIGMA CNV subgroup

Number of participants with GWAS and MRI *

Participants *

Cases and Controls

Healthy individuals

Other:

Required

If your data includes patients, what type and how many?

(for example: 80/150 scans are of bipolar patients)

Do you have related individuals in your dataset? *

(siblings, twins, parents, etc)

yes

Participant age range *

Mean age *

Ethnicity of cohort *

please let us know the ethnicity of your cohort (if multiple ethnic groups are represented, please list them all)

Chip used for genotyping *

(i.e. Affy_6.0, IlluminaOmniExpressv1, Illumina HumanExome Beadchipv1.1)

CNVs called on dataset? *

yes

Program used for CNV calling *

PennCNV

QuantiSNP

Other:

Data sharing *

We will call CNVs ourselves

We would like to send you raw genotype data and let you do the calling

Other:

Information on Imaging

Field strength *

1.5T

Other:

Vendor *

Siemens

Philips

Other:

Required

T1w data available? *

yes

How many T1w data with genotype-data is available? *

DTI data available? *

yes

How many DTI data with genotype-data available? *

Which of the following ENIGMA protocols have you completed? *

ENIGMA subcortical analysis (T1w)

ENIGMA cortical analysis (T1w)

ENIGMA DTI

None of the above

Required

Datasharing

Are you able/willing to share MRI phenotypes for mega-analysis? *

yes

Our group is able to share: *

all raw CNVs (The majority of individuals will have less than 40 raw CNV calls)

filtered CNVs (The majority of individuals will have less than 20 filtered CNV calls)

CNVs of a certain size (e.g. >250 kb)

CNVs of a certain frequency

None of the above

Required

When sharing data, the data: *

can be sent as is

needs to be deidentified (so that only the participanting group has the 'key')

needs to be anonymized

Is the above data sharing covered by our present ethical approval? *

yes

Comments for data sharing

How was your data ascertained? *

Population-based sample

Case-control design

Healthy controls only

Patient samples from hospitals/clinical settings

Phenotyping of known carriers of pathological structural gene variants

Other:

Required

Comments?

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