Registration for Breeders Bioinformatics Tool/Application Workshop

Request edit access

JavaScript isn't enabled in your browser, so this file can't be opened. Enable and reload.

Event Timing: January 30th - 31st, 2020
Event Address: John Innes Centre, Norwich
Organisers: Ruth Bryant (RAGT Seeds Ltd) and Philippa Borrill (University of Birmingham)
Contact us: Ruth Bryant 07732 445283 or via email: rbryant@ragt.fr and p.borrill@bham.ac.uk
Sponsored by The Monogram Network http://www.monogram.ac.uk/

Selection process
All breeding companies will have one assured place at the workshop. Any applicants volunteering to lead a training session will earn their company one additional place (with a threshold in place if application numbers are high). Otherwise, places will be allocated on a first come, first served basis.

Leading an online tool/application session
The main idea of this workshop is that training sessions are applicable to breeding research. By having the training sessions led by members of the breeding community or students doing breeding orientated projects, we hope to achieve this. Training sessions will consist of a short introduction to the online tool/application, and a list of questions for the class to work through which can be led throughout or applicants can be left to themselves with leader and helpers going round to help individuals (see https://drive.google.com/open?id=1mJmBiLJXaNWLuYh1bo7ioCihNkeshsEs for example worksheet). Please be assured that you don’t have to be an expert on this tool by any means and you certainly don’t have include every feature it has in your training session. Training sessions will last between 30 minutes and 1.5hrs (session leaders can specify a required time for their session once an online tool/application has been assigned to them).

Name *

Email *

Telephone number *

Do you work for/are you sponsored by a breeding company? If so please provide the company name. *

How are you associated with the above company? *

Employee

PhD student

MSc Student

Other:

Please provide very brief details of your job/project *

Would you be prepared to lead a session on any of the below applications? (Leading a training course is more likely to earn you a place at the workshop). *

Yes

Please choose 3 applications from the below table that you would prefer to lead a session on. Please also indicate if are willing to present any other applications outside your top 3 choices.

First choice

Second choice

Third choice

If needed I could present this

Wheat expression (www.wheat-expression.com)

Polymarker (http://www.polymarker.info/)

TILLING mutants on Ensembl (https://plants.ensembl.org/Triticum_aestivum/Info/Annotation#variation)

Ensembl Plants (https://plants.ensembl.org/index.html)

Barley transcriptome BaRTv1.0 (https://ics.hutton.ac.uk/barleyrtd/index.html)

Wheat pangenome (http://www.10wheatgenomes.com/data-repository/)

Germinate (https://ics.hutton.ac.uk/get-germinate/)

KnetMiner (https://knetminer.rothamsted.ac.uk/KnetMiner/)

Cereals DB (https://www.cerealsdb.uk.net/cerealgenomics/CerealsDB/indexNEW.php)

WheatIS (http://wheatis.org/)

PHI-base (http://www.phi-base.org/)

Flapjack (https://ics.hutton.ac.uk/flapjack/)

Helium (https://github.com/cardinalb/helium-docs/wiki)

R packages (your choice)

Other (please specify in comments below)