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Bioinformatics 525 Lecture 1.1 (W17)
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Which of the following operating systems is most frequently used for bioinformatics tool development
Windows
iOS
Unix
Perl
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Which of the following databases contains primarily protein sequences
GenBank
UniProt
PubMed
PDB
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You have a favorite gene, and you want to review information about that gene in multiple databases. Which one of the following resources is likely the most direct route to this information?
GO
Entrez
PubMed
PDB
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Which of the following databases contain primarily nucleotide sequences
GenBank
UniProt
PubMed
PDB
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Which of the following are "primary" databases
RefSeq
UniProt
GenBank
BLAST
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Which of the following is a RefSeq accession number corresponding to an mRNA?
J01536
1BG2
NM_15392
NP_52280
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Which of the following is a RefSeq accession number corresponding to an protein?
J01536
1BG2
NM_15392
NP_52280
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If you want literature information, what is the best website to visit?
OMIM
Entrez
PubMed
PROSITE
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Which of the following databases is derived from mRNA information?
dbEST
OMIM
SCOP
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Compare the use of Entrez and UniProt to retrieve information about a protein sequence.
Entrez is likely to yield a more comprehensive search because GenBank has more data than UniProt.
The search results are likely to be identical because the underlying raw data from GenBank and ENA (EMBL) are the same.
The search results are likely to be comparable, but the UniProtKB/SwissProt record will offer a different output format with additional kinds of information.
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What is the difference between RefSeq and GenBank?
RefSeq includes publicly available DNA sequences submitted from individual laboratories and sequencing projects.
GenBank provides nonredundant curated data.
GenBank sequences are derived from RefSeq.
RefSeq sequences are derived from GenBank and provide nonredundant curated data.
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