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Bioinformatics Search Survey
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You have identified a set of genes and are interested in the gene categories which are most over-represented. Having recently learned about the Gene Ontology, you perform the following search for relevant libraries: "Gene Ontology over representation analysis"
Overall, how would you rank the results from Search Engine A?
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Overall, how would you rank the results from Search Engine B?
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Which search engine's results do you prefer?
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What are some ways you might change the query to improve these results?
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Is there a specific package from Github you think would be very relevant to the query that was not part of the results shown? If so, list it below.
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You are performing a new analysis with a collaborator that works with flow cytometry data. This will be your first time working with flow cytometry data, so you are interested in performing some simple clustering analysis. You search for: "flow cytometry cluster analysis"
How relevant are each of the following results from Search Engine B to the query?
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How relevant are the following results from Search Engine A to the query?
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Overall, which search engine's results do you prefer?
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You decide that you'd like to analyze gene expression data from affymetrix microarrays. To get started, you query for 'gene expression affymetrix microarrays'. Please rate the following results:
How relevant are the following results from Search Engine A to the query?
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How relevant are the following results from Search Engine B to the query?
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Overall, which search engine's results do you prefer?
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If you were to use our search tool, what would you be likely to use it for?
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Write a query to search for your software need indicated above.
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