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Quiz, Day 2, "Biological Network Analysis"
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Q1: How many probes are there in each microarray?
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Q2: Which probe has the smallest p-value?
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Q3. Which type of identifier is used for the nodes?
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Q4. Can you explain what the last command exactly does?
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Q5. How does the script deal with probes that map to different Ensembl gene IDs?
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Q6. How many such probes are there?
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Q7. How many probes are there that do not map to a gene present in the network?
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Q8. What do ’>’ and ’2>’ in the command above mean?
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Q9. How many nodes and edges does the resulting network have?
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Q10. What happens when the FDR is increased?
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Q11. And what happens when it is decreased?
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Q12. How many nodes are there in US28 module?
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Q13. What is the 50th most enriched term in category MF?
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Q14. What is the most enriched pathway?
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Q15. What happens when you hover over an edge?
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Q16. What happens when you scroll on a category label?
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