CellProfiler Microscope Image Focus Module Instructions
Last updated: September 5, 2017
Install CellProfiler from source
Get CellProfiler Plugin. In the terminal, run these commands:
Install dependencies. In the terminal, run
To run CellProfiler, in the terminal run the following; note you may get import errors, but these can be safely ignored:
Not yet supported. Integration will come after the release of CellProfiler 3.0.
Not yet supported because the only Tensorflow package available on Windows uses Python 3.
 Download the test images from https://storage.googleapis.com/microscope-image-quality/static/fiji_plugin_test_images.zip. These images were excluded from the train dataset; the 6 focus examples were randomly selected and the other 2 examples show special cases.