Mass Spectrometry and Proteomic Facilities Bibliography 

(Includes authorships and acknowledgements for work done with the facilities equipment and personnel (in bold))

2001-present (439)

2019 (11)

Kapphahn RJ, Richards MJ, Ferrington DA, Fliesler SJ. (2019) Lipid-derived and other oxidative modifications of retinal proteins in a rat model of Smith-Lemli-Opitz syndrome. Exp Eye Res. 178:247-254. doi: 10.1016/j.exer.2018.08.006.

Noel BM, Ouellette SB, Marholz L, Dickey D, Navis C, Yang TY, Nguyen V, Parker SJ, Bernlohr D, Sachs Z, Parker LL. (2019) Multiomic Profiling of Tyrosine Kinase Inhibitor-Resistant K562 Cells Suggests Metabolic Reprogramming To Promote Cell Survival.  J Proteome Res. 10.1021/acs.jproteome.9b00028.

Garenne D, Beisel CL, Noireaux V. (2019) Characterization of the all-E. coli transcription-translation system myTXTL by mass spectrometry. Rapid Commun Mass Spectrom. doi: 10.1002/rcm.8438.

Zhang G, Howe M, Aldrich CC. (2019) Spirocyclic and Bicyclic 8-Nitrobenzothiazinones for Tuberculosis with Improved Physicochemical and Pharmacokinetic Properties. ACS Med Chem Lett. 23;10(3):348-351. doi: 10.1021/acsmedchemlett.8b00634.

Orchard PJ, Nascene DR, Gupta A, Taisto ME, Higgins LA, Markowski TW, Lund TC. (2019) Cerebral adrenoleukodystrophy is associated with loss of tolerance to profilin. European J Immunology https://doi.org/10.1002/eji.201848043

Mukherjee S, Sandri BJ, Tank D, McClellan M, Harasymiw LA, Yang Q, Parker LL, Gardner MK. (2019)

A Gradient in Metaphase Tension Leads to a Scaled Cellular Response in Mitosis. Dev Cell. (19)30046-2. doi: 10.1016/j.devcel.2019.01.018.

Sandri B, Masvidal L, Murie C, Bartish M, Avdulov S, Higgins L, Markowski T, Peterson M, Bergh J, Yang P, Rolny C, Limper A, Griffin T, Bitterman P, Wendt C, Larsson O. (2019) Distinct Cancer-Promoting Stromal Gene Expression Depending on Lung Function. Am J Resp Crit Care Med. doi:10.1164/rccm.201801-0080OC.

Bockman M, Mishra N, Aldrich C. (2019) The Biotin Biosynthetic Pathway in Mycobacterium tuberculosis is a Validated Target for the Development of Antibacterial Agents.Curr Med Chem. 2019 Jan 19. doi: 10.2174/0929867326666190119161551.

Bockman MR, Engelhart CA, Cramer JD, Howe M, Mishra N, Zimmerman M, Larson P, Alvarez-Cabrera N, Park SW, Boshoff HIM, Bean JM, Young V, Ferguson DM, Dartois V, Jarrett JT, Schnappinger D, Aldrich CC. (2019) Investigation of (S)-(-)-acidomycin: A selective antimycobacterial natural product that inhibits biotin synthase.  ACS Infect Dis. doi: 10.1021/acsinfecdis.8b00345.PMID: 30652474

Perez M, Blankenhorn J, Murray KJ and Parker LL. (2019) High-throughput identification of FLT3 wild-type and mutant kinase substrate preferences and application to design of sensitive in vitro kinase assay substrates.  Mol & Cell Prot.RA118.001111; https://doi.org/10.1074/mcp.RA118.001111

Folsom TD, Higgins L, Markowski TW, Griffin TJ, Fatemi SH. (2019) Quantitative proteomics of forebrain subcellular fractions in fragile X mental retardation 1 knockout mice following acute treatment with 2-Methyl-6-(phenylethynyl)pyridine: Relevance to developmental study of schizophrenia. Synapse. 73(1):e22069. doi: 10.1002/syn.22069.

2018 (47)

Wendt CH, Sandri BJ, Masvidal L, Murie C, Bartish M, Avdulov S, Higgins L, Markowski T, Peterson M, Bergh J, Yang P, Rolny C, Limper AH, Griffin TJ, Bitterman PB, Larsson O. (2018) Chronic Obstructive Pulmonary Disease Phenotype Dictates Cancer-Promoting Stromal Gene Expression Programs. Ann Am Thorac Soc. 2018 Dec;15(Supplement_4):S290-S291. doi: 10.1513/AnnalsATS.201806-421MG.

Malalgoda M, Meinhardt SW, Simsek S. (2018)  Detection and quantitation of immunogenic epitopes related to celiac disease in historical and modern hard red spring wheat cultivars. Food Chem. 30;264: 101-107.  doi: 10.1016/j.foodchem.2018.04.131.

Cabelka CA, Baumann CW, Collins BC, Nash N, Le G, Lindsay A, Spangenburg EE, Lowe DA. (2018) Effects of ovarian hormones and estrogen receptor α on physical activity and skeletal muscle fatigue in female mice. Exp Gerontoli: S0531-5565(18)30604-1. doi: 10.1016/j.exger.2018.11.003.

Howe MD, Kordus SL, Cole MS, Bauman AA, Aldrich CC, Baughn AD, Minato Y. (2018) Methionine Antagonizes para-Aminosalicylic Acid Activity via Affecting Folate Precursor Biosynthesis in Mycobacterium tuberculosis. Front Cell Infect Microbiol. 8:399. doi: 10.3389/fcimb.2018.00399.

Su, N, Wang Y,  Gupta SK,  Rosen CH. (2018) Nitrogen Fertility and Cultivar Effects on Potato Agronomic Properties and Acrylamide-forming Potential. Agron. J. 0. doi:10.2134/agronj2018.05.0350

Orlandi C, Omori Y, Wang Y, Cao Y, Ueno A, Roux MJ, Condomitti G, de Wit J, Kanagawa M, Furukawa T, Martemyanov KA. (2018) Transsynaptic Binding of Orphan Receptor GPR179 to Dystroglycan-Pikachurin Complex Is Essential for the Synaptic Organization of Photoreceptors. Cell Rep. 2;25(1):130-145.e5. doi: 10.1016/j.celrep.2018.08.068.

Kumar P, Panigrahi P, Johnson J, Weber WJ, Mehta S, Sajulga R, Easterly C, Crooker BA, Heydarian M, Anamika K, Griffin TJ, Jagtap P. (2018) QuanTP: A software resource for quantitative proteo- transcriptomic comparative data analysis and informatics. J Proteome Res.. doi: 10.1021/acs.jproteome.8b00727.

Buonomo JA, Eiden CG, Courtney C. Aldrich CC. (2018) Scalable Synthesis of Hydrido-Disiloxanes from Silanes: A One-Pot Preparation of 1,3-Diphenyldisiloxane from Phenylsilane. Synthesis 50(02): 278-281 DOI: 10.1055/s-0036-158858

Li Y, Evers J, Luo A, Erber L, Postler Z, Chen Y. (2018) A Quantitative Chemical Proteomics Approach for Site-specific Stoichiometry Analysis of Ubiquitination. Angew Chem Int Ed Engl. doi:10.1002/anie.201810569.

 

Lindsay A, Chamberlain CM, Witthuhn BA, Lowe D, and Ervasti JM. (2018) Dystrophinopathy associated dysfunction of Krebs cycle metabolism. Hum Mol Genet. doi: 10.1093/hmg/ddy404. https://doi.org/10.1093/hmg/ddy404

Johnson JE, Kumar P, Easterly C, Esler M, Mehta S, Eschenlauer AC, Hegeman AD, Jagtap PD, Griffin TJ. (2018) Improve your Galaxy text life: The Query Tabular Tool. F1000Research , 7:1604 (doi: 10.12688/f1000research.16450.1)  [revised 2019 Jan 9];7:1604. doi: 10.12688/f1000research.16450.2. eCollection 2018.

Jagtap P, Viken KJ, Johnson J, McGowan T, Pendleton KM, Griffin TJ, Hunter RC, Rudney JD, Bhargava M. (2018). BAL Fluid Metaproteome in Acute Respiratory Failure. Am J Respir Cell Mol Bgriffiniol. 59(5):648-652. doi: 10.1165/rcmb.2018-0068LE.

Li D, Huang F, Zhao Y, Villata PW, Griffin TJ, Zhang L, Li L,Yu F. (2018) Plasma lipoproteome in Alzheimer’s disease: a proof-of-concept study. Clin Proteomics. 15: 31.. doi: 10.1186/s12014-018-9207-z

Sajulga R, Mehta S, Kumar P, Johnson JE, Guerrero CR, Ryan MC, Karchin R, Jagtap PD, Griffin TJ. (2018) Bridging the Chromosome-Centric and Biology and Disease Human Proteome Projects: Accessible and automated tools for interpreting biological and pathological impact of protein sequence variants detected via proteogenomics. J Proteome Res. 21. doi: 10.1021/acs.jproteome.8b00404.

Fallon AM. (2018) Strain-specific response to ampicillin in Wolbachia-infected mosquito cell lines.           In Vitro Cell Dev Biol Anim. doi: 10.1007/s11626-018-0279-x.

Le G, Novotny SA, Mader TL, Greising SM, Chan SSK, Kyba M, Lowe DA, Warren GL. (2018) A moderate estradiol level enhances neutrophil number and activity in muscle after traumatic injury but strength recovery is accelerated. J Physiol. 596(19):4665-4680. doi: 10.1113/JP276432.

Afiuni-Zadeh S, Boylan KLM, Jagtap PD, Griffin TJ, Rudney JD, Peterson ML, and Skubitz APN. (2018)  Evaluating the potential of residual Pap test fluid as a resource for the metaproteomic analysis of the cervical-vaginal microbiome. Scientific Reports.8:10868. doi:10.1038/s41598-018-29092-4.

Her C, Thompson AR, Karim CB, Thomas DD. (2018) Structural dynamics of calmodulin-ryanodine receptor interactions: electron paramagnetic resonance using stereospecific spin labels. Sci Rep.  16;8(1):10681. doi: 10.1038/s41598-018-29064-8.

Fealey ME, Horn B, Coffman C, Miller R, Lin AY, Thompson AR, Schramel J, Groth E, Hinderliter A, Cembran A, Thomas DD. (2018) Dynamics of Dystrophin's Actin-Binding Domain. Biophys J. 5(18)30722-7. doi: 10.1016/j.bpj.2018.05.039.

Hauck AK, Zhou T, Hahn WS, Petegrosso R, Kuang R, Chen Y, Bernlohr DA. (2018) Obesity-Induced Protein Carbonylation In Murine Adipose Tissue Regulates The DNA Binding Domain Of Nuclear Zinc-Finger Proteins. J Biol Chem.293(35)13464-13476. doi:10.1074/jbc.RA118.003469.

Maserati A, Lourenco A, Diez-Gonzalez F, Fink RC. (2018) iTRAQ-based Global Proteomic Analysis of Salmonella enterica serovar Typhimurium in Response to Desiccation, Low aw, and Thermal Treatment.Appl Environ Microbiol. Appl Environ Microbiol..00393-18. doi: 10.1128/AEM.00393-18.

Hadi SA, Waters WR, Palmer M, Lyashchenko KP and Srinand Sreevatsan. (2018) Development of a Multidimensional Proteomic Approach to Detect Circulating Immune Complexes in Cattle Experimentally Infected With Mycobacterium bovis. Front. Vet. Sci., 26  https://doi.org/10.3389/fvets.2018.00141

Smestad J, Erber L, Chen Y, Maher LJ 3rd. (2018) Chromatin Succinylation Correlates with Active Gene Expression and Is Perturbed by Defective TCA Cycle Metabolism. iScience. 27;2:63-75. doi: 10.1016/j.isci.2018.03.012.

Bower R, Tritschler D, VanderWaal Mills K, Heuser T, Nicastro D, and Porter ME. (2018) DRC2/CCDC65 is a central hub for assembly of the nexin–dynein regulatory complex and other regulators of ciliary and flagellar motility. Mol Biol Cell.  29(2): 137–153.

Guhathakurta P, Prochniewicz E, Grant BD, Peterson KC and Thomas DD. (2018) High-throughput screen, using time-resolved FRET, yields actin-binding compounds that modulate actin-myosin structure and function. J  Biol Chem.. pii: jbc.RA118.002702. doi: 10.1074/jbc.RA118.002702.

Sandri BJ, Kaplan A, Hodgson SW, Peterson M, Avdulov S, Higgins LA, Markowski T, Yang P, Limper AH, Griffin TJ, Bitterman P, Lock EF, Wendt CH. (2018) Multi-Omic Molecular Profiling of Lung Cancer in Chronic Obstructive Pulmonary Disease. Euro Resp Jour DOI: 10.1183/13993003.02665-2017

Malalgoda M, Ohm JB, Meinhardt S, Simsek S. (2018) Association between gluten protein composition and breadmaking quality characteristics in historical and modern spring wheat. Cereal Chem. 95:226–238. https://doi.org/10.1002/cche.10014

Murie C, Sandri B, Sandberg A-S, Griffin TJ,  Lehtiö J,  Wendt C, and Larsson O. (2018) Normalization of mass spectrometry data (NOMAD) Adv Biol Regul. 67: 128–133.

Ge XN, Bastan I, Dileepan M, Greenberg Y, Ha SG, Steen KA, Bernlohr DA, Rao SP, Sriramarao P. (2018) FABP4 regulates eosinophil recruitment and activation in allergic airway inflammation. Am J Physiol Lung Cell Mol Physiol. doi: 10.1152/ajplung.00429.2017.

Tiwari D, Park SW, Essawy MM, Dawadi S, Mason A, Nandakumar M, Zimmerman M, Mina M, Ho HP, Engelhart CA, Ioerger T, Sacchettini JC, Rhee K, Ehrt S, Aldrich CC, Dartois V, Schnappinger D. (2018) Targeting protein biotinylation enhances tuberculosis chemotherapy. Sci Transl Med. 25;10(438). pii: eaal1803. doi: 10.1126/scitranslmed.aal1803.

Ghosal R, Eichmiller JJ, Witthuhn BA, Sorensen PW. (2018) Attracting Common Carp to a bait site with food reveals strong positive relationships between fish density, feeding activity, environmental DNA, and sex pheromone release that could be used in invasive fish management. Ecol Evol. 11;8(13):6714-6727. doi: 10.1002/ece3.4169.

Rosen C, Sun N, Olsen N, Thornton T, Pavek M,Lisa Knowles L, Knowles NR. (2018) Impact of Agronomic and Storage Practices on Acrylamide in Processed Potatoes.  American J Potato Res. 95, 4, p. 319-327 9

Dawadi S, Boshoff HIM, Park SW, Schnappinger D, Aldrich CC. (2018) Conformationally Constrained Cinnolinone Nucleoside Analogues as Siderophore Biosynthesis Inhibitors for Tuberculosis. ACS Med Chem Lett. 16;9(4):386-391. doi: 10.1021/acsmedchemlett.8b00090.

Bockman MR, Engelhart CA, Dawadi S, Larson P, Tiwari D, Ferguson DM, Schnappinger D, Aldrich CC. (2018) Avoiding Antibiotic Inactivation in Mycobacterium tuberculosis by Rv3406 through Strategic Nucleoside Modification. ACS Infect Dis. 4(7):1102-1113. doi: 10.1021/acsinfecdis.8b00038.

Wang L, Joshi P, Miller EL, Higgins L, Slattery M, Simon JA. (2018) A Role for Monomethylation of Histone H3-K27 in Gene Activity in Drosophila.Genetics. 2018 Mar;208(3):1023-1036. doi: 10.1534/genetics.117.300585..

Aboubakr HA, Mor SK, Higgins L, Armien A, Youssef MM, Bruggeman PJ, Goyal SM. (2018) Cold argon-oxygen plasma species oxidize and disintegrate capsid protein of feline calicivirus. PLoS One. 13(3):e0194618. doi: 10.1371/journal.pone.0194618.

Sun N, Rosen CJ, Thompson AL. (2018) Acrylamide Formation in Processed Potatoes as Affected by Cultivar, Nitrogen Fertilization and Storage Time. American Journal of Potato Research DOI 10.1007/s12230-018-9647-z

Heinsch SC, Das SR, Smanski MJ. (2018) Simulation Modeling to Compare High-Throughput, Low-Iteration Optimization Strategies for Metabolic Engineering. Front Microbiol. 9:313. doi: 10.3389/fmicb.2018.00313. eCollection 2018.

Minato Y, Dawadi S, Kordus SL, Sivanandam A, Aldrich CC, Baughn AD. (2018) Mutual potentiation drives synergy between trimethoprim and sulfamethoxazole. Nat Commun. 8;9(1):1003. doi: 10.1038/s41467-018-03447.

Jensen MR, Goblirsch BR, Esler MA, Christenson JK, Mohamed FA, Wackett LP, Wilmot CM. (2018) The role of OleA His285 in orchestration of long-chain acyl-coenzyme A substrates. FEBS Lett. Accepted Author Manuscript. doi:10.1002/1873-3468.13004

Blank C, Easterly C, Gruening B, Johnson J, Kolmeder CA, Kumar P, May D, Mehta S, Mesuere B, Brown Z, Elias JE, Hervey WJ, McGowan T, Muth T, Nunn B, Rudney J, Tanca A, Griffin TJ, Jagtap P. (2018) Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework. Proteomes.6(1). pii: E7. doi: 10.3390/proteomes6010007.

Bennett BD, Redford KE, Gralnick JA. (2018) Survival of anaerobic Fe2+ stress requires the ClpXP protease.J Bacteriol. 2018 Jan 29. pii: JB.00671-17. doi: 10.1128/JB.00671-17.

Colwell M, Drown M, Showel K, Drown C, Palowski A, Faulk C. (2018) Evolutionary Conservation of DNA Methylation in CpG Sites within Ultraconserved Noncoding Elements. Epigenetics. 26:1-25. doi: 10.1080/15592294.2017.1411447.

Truong TH, Hu H, Temiz NA, Hagen K, Girard BJ, Brady NJ, Schwertfeger KL, Lange CA, Ostrander JH. (2018) Cancer Stem Cell Phenotypes in ER+ Breast Cancer Models are Promoted by PELP1/AIB1 Complexes. Mol Cancer Res. 0598.2017. doi: 10.1158/1541-7786.MCR-17-0598.

Pett SL, Kunisaki KM, Wentworth D, Griffin TJ, Kalomenidis G, Nahra R,  Sanchez M, Hodgson SW,  Ruxrungtham K, Dwyer D, Davey RT, Wendt CH. INSIGHT FLU003 Plus Study Group. (2018) Increased Indoleamine-2,3-Dioxygenase Activity Is Associated With Poor Clinical Outcome in Adults Hospitalized With Influenza in the INSIGHT FLU003Plus Study. Open Forum Infectious Diseases, Volume 5, Issue 1, 1 ofx228, https://doi.org/10.1093/ofid/ofx228

Torres SMF, Furrow E, Souza CP, Granick JL, de Jong EP, Griffin TJ, Wang X. (2018) Salivary proteomics of healthy dogs: An in depth catalog. PLoS One.13(1):e0191307. doi: 10.1371/journal.pone.0191307.

Park JM, Seo M, Jung CH, Grunwald D, Stone M, Otto NM, Toso E, Ahn Y, Kyba M, Griffin TJ, Higgins L, Kim DH. (2018) ULK1 phosphorylates Ser30 of BECN1 in association with ATG14 to stimulate autophagy induction.Autophagy. 9:1-28. doi: 10.1080/15548627.2017.1422851.

2017 (36)

Schroer HW, Li X, Lehmler HJ, Just CL. (2017) Metabolism and Photolysis of 2,4-Dinitroanisole in Arabidopsis. Environ Sci Technol.;51(23):13714-13722. doi: 10.1021/acs.est.7b04220.

Smestad J, Hamidi O, Wang L, Holte MN, Khazal FA, Erber L, Chen Y, Maher LJ 3rd. (2017) Characterization and metabolic synthetic lethal testing in a new model of SDH-loss familial pheochromocytoma and paraganglioma. Oncotarget.;9(5):6109-6127. doi: 10.18632/oncotarget.23639.

Schroer HW, Li X2, Lehmler HJ, Just CL. (2017) Metabolism and Photolysis of 2,4-Dinitroanisole in Arabidopsis. Environ Sci Technol. 2017 Dec 5;51(23):13714-13722. doi: 10.1021/acs.est.7b04220.

Fan K-T, Rendah AKl, Chen W-P, Freund DM, Gray WM, Cohen JD, Hegeman AD. (2017) Proteome Scale-Protein Turnover Analysis Using High Resolution Mass Spectrometric Data from Stable-Isotope Labeled Plants.  J Proteome Res. 2016 Mar 4; 15(3): 851–867.

Zacharoff LA, Morrone DJ, Bond DR. (2017) Geobacter sulfurreducens Extracellular Multiheme Cytochrome PgcA Facilitates Respiration to Fe(III) Oxides But Not Electrodes. Front Microbiol. 12;8:2481. doi: 10.3389/fmicb.2017.02481.

Kigar SL, Chang L, Guerrero CR, Sehring JR, Cuarenta A, Parker LL, Bakshi VP, Auger AP. (2017) N6-methyladenine is an epigenetic marker of mammalian early life stress. Sci Rep. 22;7(1):18078. doi: 10.1038/s41598-017-18414-7.

Okon A, Han J, Dawadi S, Demosthenous C, Aldrich CC, Gupta M, Wagner CR. (2017) Anchimerically Activated ProTides as Inhibitors of Cap-Dependent Translation and Inducers of Chemosensitization in Mantle Cell Lymphoma.  J Med Chem.60(19):8131-8144. Doi: 10.1021/acs.jmedchem.7b00916.

Bowler RP, Wendt CH, Fessler FB, Foster MW, Kelly RS, Lasky-Su J, Rogers AJ, Stringer KA, and Winston BW; on behalf of the American Thoracic Society Workgroup on Metabolomics and Proteomics. (2017) New Strategies and Challenges in Lung Proteomics and Metabolomics An Official American Thoracic Society Workshop Report Ann Am Thorac Soc Vol 14, No 12, pp 1721–1743.

Khairutdinov BI, Ermakova EA, Yusypovych YM, Bessolicina EK, Tarasova NB, Toporkova YY, Kovaleva V, Zuev YF, Nesmelova IV. (2017) NMR structure, conformational dynamics, and biological activity of PsDef1 defensin from Pinus sylvestris.Biochim Biophys Acta. 1865(8):1085-1094. doi: 10.1016/j.bbapap.2017.05.012.

Murie C, Sandri B, Griffin TJ, Wendt C, Larsson O. (2017)  Normalization of Mass Spectrometry Data (NOMAD). bioRxiv doi: http://dx.doi.org/10.1101/105783. Adv Biol Regul.. pii: S2212-4926(17)30174-4. doi: 10.1016/j.jbior.2017.11.005.

Bower R, Tritschler D, Mills KV, Heuser T, Nicastro D, Porter ME. (2017) DRC2/CCDC65 is a central hub for assembly of the N-DRC and other regulators of ciliary and flagellar motility. Mol Biol Cell. 22. pii: mbc.E17-08-0510. doi: 10.1091/mbc.E17-08-0510.

Chambers MC, Jagtap PD, Johnson JE, McGowan T, Kumar P, Onsongo G, Guerrero CR, Barsnes H, Vaudel M, Martens L, Grüning B, Cooke IR, Heydarian M, Reddy KL and Griffin TJ. (2017) An Accessible Proteogenomics Informatics Resource for Cancer. Cancer Res 77:e43-e46.  DOI: 10.1158/0008-5472. CAN-17-0331

Peterson KN, Tan DT,  Bezares-Cruz JC, Novak PJ. (2017)  Estrone biodegradation in laboratory- scale systems designed for total nitrogen removal from wastewater. Environ Sci: Water Res Technol. https://doi.org/10.1039/C7EW00164A

Cox MK, Peterson KN, Tan D, Novak PJ, Schoenfuss HL, Ward JL. (2017) Temperature modulates estrone degradation and biological effects of exposure in fathead minnows. Sci Total Environ. pii: S0048-9697(17)32771-7. doi: 10.1016/j.scitotenv.2017.10.069.

Jensen MR, Goblirsch BR, Christenson JK, Esler MA, Mohamed FA, Wackett LP, Wilmot CM. (2017) OleA Glu117 is key to condensation of two fatty-acyl coenzyme A substrates in long-chain olefin biosynthesis.Biochem J.. pii: BCJ20170642. doi: 10.1042/BCJ20170642.

Chen D, Tavana O, Chu B, Erber L, Chen Y, Baer R, Gu W. (2017) NRF2 Is a Major Target of ARF in p53-Independent Tumor Suppression.Mol Cell.5;68(1):224-232.doi:10.1016

Tu X, Latham JA, Klema VJ, Evans RL 3rd, Li C, Klinman JP, Wilmot CM. (2017) Crystal structures reveal metal-binding plasticity at the metallo-β-lactamase active site of PqqB from Pseudomonas putida. J Biol Inorg Chem. doi: 10.1007/s00775-017-1486-8.

Dawadi S, Kordus SL, Baughn AD, Aldrich CC. (2017) Synthesis and Analysis of Bacterial Folate Metabolism Intermediates and Antifolates. Org Lett. 10.1021/acs.orglett.7b02487.

Christenson JK, Robinson SL, Engel TA, Richman JE, Kim AN, Wackett LP. (2017) OleB from bacterial hydrocarbon biosynthesis is a β-lactone decarboxylase sharing key features with haloalkane dehalogenases. Biochemistry.  doi: 10.1021/acs.biochem.7b00667.

Bhargava M, Viken K, Wang Q, Jagtap P, Bitterman P, Ingbar D, Wendt C. (2017) Bronchoalveolar Lavage Fluid Protein Expression in Acute Respiratory Distress Syndrome Provides Insights into Pathways Activated in Subjects with Different Outcomes.  Sci Rep.;7(1):7464. doi:10.1038/s41598-017-07791-8.

Guhathakurta P, Prochniewicz E, Roopnarine O, Rohde JA, Thomas  DD. (2017) A Cardio- myopathy Mutation in the Myosin Essential Light Chain Alters Actomyosin Structure.  Biophysical Journal, Vol. 113, Issue 1, p91–100

Eiden CG, Aldrich CC. (2017) Synthesis of a 3-Amino-2,3-dihydropyrid-4-one and Related Heterocyclic Analogs as Mechanism-Based Inhibitors of BioA, a Pyridoxal-Phosphate (PLP) Dependent Enzyme.  J Org Chem. doi: 10.1021/acs.joc.7b00847.

Xia H, Gilbertsen A, Herrera J, Racila E, Smith K, Peterson M, Griffin T, Benyumov A, Yang L, Bitterman PB, Henke CA. (2017) Calcium-binding protein S100A4 confers mesenchymal progenitor cell fibrogenicity in idiopathic pulmonary fibrosis.  J Clin Invest. 30;127(7):2586-2597.

Eiden CG, Maize KM, Finzel BC, Lipscomb JD, Aldrich CC. (2017) Rational Optimization of Mechanism- Based Inhibitors through Determination of the Microscopic Rate Constants of Inactivation. J Am Chem Soc.  31: 139(21):7132-7135.

Khairutdinov BI, Ermakova EA, Yusypovych YM, Bessolicina EK, Tarasova NB, Toporkova YY, Kovaleva V, Zuev YF, Nesmelova IV. (2017) NMR structure, conformational dynamics, and biological activity of PsDef1 defensin from Pinus sylvestris. Biochim Biophys Acta. 1865 (8):1085-1094.

Baldridge GD, Higgins LA, Witthuhn BA, Markowski TW, Baldridge AS, Armien AG, Fallon AM. (2017) Proteomic analysis of a mosquito host cell response to persistent Wolbachia infection. Res Microbiol. S0923-2508(17)30087-6. doi: 10.1016 PMID: 28435138

Guerrero CR, Jagtap PD, Johnson JE, Griffin TJ. (2017) Using Galaxy for Proteomics. New Developments in Mass Spectrometry (Book 5)Proteome Informatics Editor: Conrad Bessant Publisher: Royal Soharveyciety of Chemistry; Gld edition  Chapter 13 Pages 289 - 320  Series:

Hodgson S, Griffin TJ, Reilly C, Harvey S, Witthuhn BA, Sandri BJ, Kunisaki KM, Wendt CH. (2017) Plasma sphingolipids in HIV-associated chronic obstructive pulmonary disease 

BMJ Open Respiratory Research 4 (1) e000180; DOI: 10.1136/ PMID:28409005

Christenson JK, Jensen MR, Goblirsch BR, Mohamed F, Zhang W, Wilmot CM, Wackett LP. (2017) Active Multi-Enzyme Assemblies for Long-Chain Olefinic Hydrocarbon Biosynthesis. J Bacteriol. 21. pii: JB.00890-16. doi: 10.1128/JB.00890-16.

Presley GN, Schilling JS. (2017) Distinct growth and secretome strategies by two taxonomically- divergent brown rot fungi.  Appl Environ Microbiol.. pii: AEM.02987-16. Doi: 10.1128

Aukema KG, Escalante DE, Maltby MM, Bera AK, Aksan A, Wackett LP. (2017) In Silico Identification of Bioremediation Potential: Carbamazepine and Other Recalcitrant Personal Care Products. Environ Sci Technol. 17;51(2):880-888. doi: 10.1021/acs.est.6b04345.

Patrinostro X, O'Rourke AR, Chamberlain CM, Moriarity BS, Perrin BJ, Ervasti JM. (2017) Relative importance of βcyto- and γcyto-actin in primary mouse embryonic fibroblasts. Mol Biol Cell.. pii: mbc.E16-07-0503. doi: 10.1091/mbc.E16-07-0503.

Christenson JK, Richman JE, Jensen MR, Neufeld JY, Wilmot CM, Wackett LP. (2017)  β-Lactone Synthetase Found in the Olefin Biosynthesis Pathway. Biochem. pr 11;199(9).6b01199.

Sun N, Rosen CJ, Thompson AL. (2017) Nitrogen Response of French Fry and Chip Cultivars Selected for Low Tuber Reducing Sugars. American Journal of Potato Research Volume 94, Issue 6, 1 Pages 606-616

Rebbeck RT, Essawy MM, Nitu FR, Grant BD, Gillispie GD, Thomas DD, Bers DM, Cornea RL. (2017) High-Throughput Screens to Discover Small-Molecule Modulators of Ryanodine Receptor Calcium Release Channels. SLAS Discov.22(2):176-186. doi: 10.1177/1087057116674312.

Liu F, Dawadi S, Maize KM, Dai R, Park SW, Schnappinger D, Finzel BC, Aldrich CC. (2017) Structure-Based Optimization of Pyridoxal 5′-Phosphate-Dependent Transaminase Enzyme (BioA) Inhibitors that Target Biotin Biosynthesis in Mycobacterium tuberculosis. J Med Chem.  60(13): 5507–5520.

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Fiers WD, Dodge GJ, Sherman DH, Smith JL, Aldrich CC. (2016) Vinylogous Dehydration by a Polyketide Dehydratase Domain in Curacin Biosynthesis. J Am Chem Soc.138(49):16024-16036.

Long H, Zhang F, Xu N, Liu G, Diener DR, Rosenbaum JL, Huang K. (2016) Comparative Analysis of Ciliary Membranes and Ectosomes. Curr Biol  (16)31140-X. doi: 10.1016/j.cub.2016.09.055

Plesofsky N, Higgins L, Markowski T, Brambl R. (2016) Glucose Starvation Alters Heat Shock Response, Leading to Death of Wild Type Cells and Survival of MAP Kinase Signaling Mutant. PLoS One. 21;11(11):e0165980. doi: 10.1371/journal.pone.0165980.

Goblirsch BR, Jensen MR, Mohamed F, Wackett LP, Wilmot CM. (2016) Substrate Trapping in Crystals of the Thiolase OleA Identifies Three Channels that Enable Long-Chain Olefin Biosynthesis. J Biol Chem. Nov 4. pii: jbc.M116.760892.

Yeh HS, Chang JW, Yong J. (2016) Ribo-Proteomics Approach to Profile RNA-Protein and Protein-Protein Interaction Networks.Methods Mol Biol.1421:165-74. doi: 10.1007/978-1-4939-3591-8_14.

Omidvar R, Xia Y, Porcelli F, Bohlmann H, Veglia G. (2016) NMR structure and conformational dynamics of AtPDFL2.1, a defensin-like peptide from Arabidopsis thaliana. Biochim Biophys Acta.1864(12):1739-1747. doi: 10.1016/j.bbapap.2016.08.017.

Zhou T, Erber L, Liu B, Gao Y, Ruan HB, Chen Y. (2016) Proteomic analysis reveals diverse proline hydroxylation-mediated oxygen-sensing cellular pathways in cancer cells. Oncotarget 7(48):79154-79169.  doi: 10.18632/oncotarget.12632.

Zhao X, Kotilinek LA, Smith B, Hlynialuk C, Zahs K, Ramsden M, Cleary J, Ashe KH. (2016) Caspase-2 cleavage of tau reversibly impairs memory. Nat Med. Oct 10. doi: 10.1038/nm.4199.

Evans RL, Latham JA, Klinman JP, Wilmot CM, Xia Y. (2016)  1H, 13C, and 15N resonance assignments and secondary structure information for Methylobacterium extorquens PqqD and the complex of PqqD with PqqA.  Biomol NMR Assign doi:10.1007/s12104-016-9705-81

Cembran A, Hinderliter A, Sachs JN. (2016) Oxidation increases the strength of the methionine-aromatic interaction. Nat Chem Biol. doi: 10.1038/nchembio.2159. [Epub ahead of print]

Rebbeck RT, Nitu FR, Rohde D, Most P, Bers DM, Thomas DD, Cornea RL. (2016) S100A1 Protein Does Not Compete with Calmodulin for Ryanodine Receptor Binding but Structurally Alters the Ryanodine Receptor·Calmodulin Complex. J Biol Chem;291(30):15896-907.

Tivendale ND, Jewett EM, Hegeman AD, Cohen JD. (2016) Extraction, purification, methylation and GC-MS analysis of short-chain carboxylic acids for metabolic flux analysis. J Chromatogr B Analyt Technol Biomed Life Sci. 1028:165-74. doi: 10.1016/j.jchromb

Godin LM, Sandri BJ, Wagner DE, Meyer CM, Price AP, Akinnola I, Weiss DJ, Panoskaltsis-Mortari A. (2016) Decreased Laminin Expression by Human Lung Epithelial Cells and Fibroblasts Cultured in Acellular Lung Scaffolds from Aged Mice. PLoS One.11(3):e0150966.

Devamani T, Rauwerdink AM, Lunzer M, Jones BJ, Mooney JL, Tan MA, Zhang ZJ, Xu JH, Dean AM, Kazlauskas RJ. (2016).Catalytic Promiscuity of Ancestral Esterases and Hydroxynitrile Lyases. J Am Chem Soc. 2016 Jan 27;138(3):1046-56. doi: 10.1021/jacs.5b12209.

Gulcev M, Reilly C, Griffin TJ, Broeckling CD, Sandri BJ, Witthuhn BA, Hodgson SW, Woodruff PG, Wendt CH. (2016) Tryptophan catabolism in acute exacerbations of chronic obstructive pulmonary disease. Int J Chron Obstruct Pulmon Dis.;11:2435-2446.

Lewis AK, Dunleavy KM, Senkow TL, Her C, Horn BT, Jersett MA, Mahling R, McCarthy MR, Perell GT, Valley CC, Karim CB, Gao J, Pomerantz WC, Thomas DD, .2016.05.042.

Colson BA, Thompson AR, Espinoza-Fonseca LM, Thomas DD. (2016) Site-directed spectroscopy of cardiac myosin-binding protein C reveals effects of phosphorylation on protein structural dynamics PNAS U S A. 2016 Mar 22;113(12):3233-8. doi: 10.1073/pnas.1521281113.

Abulaban KM, Song H, Zhang X, Kimmel PL, Kusek JW, Nelson RG, Feldman HI, Vasan RS, Ying J, Mauer M, Nelsestuen GL, Bennett M,Brunner HI, Rovin BH. (2016) Predicting decline of kidney function in lupus nephritis using urine biomarkers. Lupus. 25(9):1012-8.

Reck J, Schauer AM, VanderWaal Mills K, Bower R, Tritschler D, Perrone CA, Porter ME. (2016) The role of the dynein light intermediate chain in retrograde IFT and flagellar function in Chlamydomonas.  Mol Biol Cell. 2016 Jun 1. pii: mbc.E16-03-0191.

Goldford JE, Libourel IG. (2016) Unsupervised Identification of Isotope-Labeled Peptides. Anal Chem. 2016 Jun 7;88(11):6092-9. doi: 10.1021/acs.analchem.6b01703.

Ballinger MA, Hess C, Napolitano MW, Bjork JA, Andrews MT. (2016)  Seasonal Changes in Brown Adipose Tissue Mitochondria in a Mammalian Hibernator: from Gene Expression to Function. Am J Physiol Regul Integr Comp Physiol. doi: 10.1152/ajpregu.00463.2015.

Wendt CH, Nelsestuen G, Harvey S, Gulcev M, Stone M, Reilly C. (2016) Peptides in Bronchoalveolar Lavage in Chronic Obstructive Pulmonary Disease. PLoS One. 26;11(5):e0155724. doi: 10.1371/journal.pone.0155724.

Bhargava M, Viken KJ, Dey S, Steinbach MS, Wu B, Jagtap PD, Higgins L, Panoskaltsis-Mortari A, Weisdorf DJ, Kumar V, Arora M, Bitterman PB, Ingbar DH, Wendt CH. (2016) Proteome Profiling in Lung Injury Following Hematopoietic Stem Cell Transplantation. Biol Blood Marrow Transplant (8):1383-90. doi: 10.1016/j.bbmt.2016.04.021.

Butterick TA, Hocum Stone L, Duffy C, Holley C, Cabrera JA, Crampton M, Ward HB, Kelly RF, McFalls EO. (2016) Pioglitazone increases PGC1-α signaling within chronically ischemic myocardium.Basic Res Cardiol.111(3):37. doi: 10.1007/s00395-016-0555-4.

Van Riper SK, Higgins L, Carlis JV, Griffin TJ. (2016) RIPPER: a framework for MS1 only metabolomics and proteomics label-free relative quantification. Bioinformatics. btw091.

Thu YM, Van Riper SK, Higgins L, Zhang T, Becker JR, Markowski TW, Nguyen HD, Griffin TJ, Bielinsky AK. (2016) Slx5/Slx8 Promotes Replication Stress Tolerance by Facilitating Mitotic Progression. Cell Rep. pii: S2211-1247(16)30430-2. doi: 10.1016/j.celrep.2016.04.017.

Zhou T, Chung Y, Chen J, and Chen Y. (2016) Site-Specific Identification of Lysine Acetylation Stoichiometries in Mammalian Cells. J. Proteome Res. 2016, 15, 1103−1113  DOI: 10.1021/acs.

Afiuni-Zadeh S, Rogers JC, Snovida SI, Bomgarden RD, Griffin TJ. (2016)  AminoxyTMT: A novel multi-functional reagent for characterization of protein carbonylation. Biotechniques. 1;60(4):186-96. doi: 10.2144/000114402.

Ranade AR, Higgins L, Markowski TW, Glaser N, Kashin D, Bai R, Hong KH, Hamel E, Höfle G, Georg GI. (2016)  Characterizing the Epothilone Binding Site on β-Tubulin by Photoaffinity Labeling: Identification of β-Tubulin Peptides TARGSQQY and TSRGSQQY as Targets of an Epothilone Photoprobe for Polymerized Tubulin.  J Med Chem: 59(7):3499-514.

Yeh HS, Chang JW, Yong J. (2016) Ribo-Proteomics Approach to Profile RNA-Protein and Protein-Protein Interaction Networks. Methods Mol Biol. 2016;1421:165-74.

Kazemizadeh Gol MA, Lund TC, Levine SC, Adams ME. (2016) Quantitative Proteomics of Vestibular Schwannoma Cerebrospinal Fluid: A Pilot Study. Otolaryngol Head Neck Surg 154(5): 902-6.

Anderson KJ, Vermillion KL, Jagtap P, Johnson JE, Griffin TJ, Andrews MT. (2016) Proteogenomic analysis of a hibernating mammal indicates contribution of skeletal muscle physiology to the hibernation phenotype. J Proteome Res.

Chen Y. (2016) Quantitative Analysis of the Sirt5-Regulated Lysine Succinylation Proteome in Mammalian Cells.  Methods Mol Biol: 1410:23-37. doi: 10.1007/978-1-4939-3524-6_2.

Fan KT, Rendahl AK, Chen WP, Freund DM, Gray WM, Cohen JD, Hegeman AD. (2016) Proteome Scale-Protein Turnover Analysis Using High Resolution Mass Spectrometric Data from Stable-Isotope Labeled Plants. J Proteome Res. 2016 Jan 29. [Epub ahead of print]

Lane MD, Seelig B. (2016) Highly efficient recombinant production and purification of streptococcal cysteine protease streptopain with increased enzymatic activity. Protein Expr Purif.: S1046-5928(16)30002-X. doi: 10.1016

Baldridge GD, Markowski TW, Witthuhn BA, Higgins LA, Baldridge AS, Fallon AM. (2016)  The Wolbachia WO bacteriophage proteome in the Aedes albopictus C/wStr1 cell line: evidence for lytic activity?  In Vitro Cell.Dev.Biol.—Animal  52:77–88

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McCarthy MR, Thompson AR, Nitu F, Moen RJ, Olenek MJ, Klein JC, Thomas DD. (2015) Impact of methionine oxidation on calmodulin structural dynamics. Biochem Biophys Res Commun. 2015 Jan 9;456(2):567-72. doi: 10.1016/j.bbrc.2014.11.091.

Oliva Chávez AS, Fairman JW, Felsheim RF, Nelson CM, Herron MJ, Higgins L, Burkhardt NY, Oliver JD, Markowski TW, Kurtti TJ, Edwards TE, Munderloh UG. (2015) An O-Methyltransferase Is Required for Infection of Tick Cells by Anaplasma phagocytophilum. PLoS Pathog. 6;11(11): e1005248.  doi: 10.1371/journal.ppat.1005248.

Wang YC, Distefano MD. (2015) Synthetic isoprenoid analogues for the study of prenylated proteins: Fluorescent imaging and proteomic applications. Bioorg Chem. :64:59-65.

Karim CB, Espinoza-Fonseca LM, James ZM, Hanse EA, Gaynes JS, Thomas DD, Kelekar A. (2015) Structural Mechanism for Regulation of Bcl2 protein Noxa by phosphorylation. Sci Rep 5:14557.

Miller MC, Ippel H, Suylen D, Klyosov AA, Traber PG, Hackeng T, Mayo KH. (2015) Binding of polysaccharides to human galectin-3 at a noncanonical site in its carbohydrate recognition domain. Glycobiology 26(1):88-99.

Rudney JD, Jagtap PD, Reilly CS, Chen R, Markowski TW, Higgins LA, Johnson JE, Griffin TJ. (2015) Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries.

Microbiome 3(1). DOI:10.1186/s40168-015-0136

Gao Y, Faris  JD, Liu Z, Kim YM, Syme RA, Oliver RP, Xu SS, Friesen TL. (2015) Identification and Characterization of the SnTox6-Snn6 Interaction in the Parastagonospora nodorum-Wheat Pathosystem. Mol Plant Microbe Interact 28(5):615-25.

Cao Y, Sarria I, Fehlhaber KE, Kamasawa N, Orlandi C, James KN, Hazen JL, Gardner MR, Farzan M, Lee A, Baker S, Baldwin K, Sampath AP, Martemyanov KA. (2015) Mechanism for Selective Synaptic Wiring of Rod Photoreceptors into the Retinal Circuitry and Its Role in Vision. Neuron.;87(6):1248-60.

Barnidge DR, Krick TP, Griffin TJ, Murray DL. (2015) Using matrix-assisted laser desorption/

ionization time-of-flight mass spectrometry to detect monoclonal immunoglobulin light chains in serum and urine. Rapid Commun Mass Spectrom;29(21):2057-60. doi: 10.1002/rcm.731

Vermillion KL, Jagtap P, Johnson JE, Griffin TJ, Andrews MT. (2015) Characterizing cardiac molecular mechanisms of mammalian hibernation via quantitative proteogenomics J. Proteome Res, DOI: 10.1021/acs.

Khan SA, Wollaston-Hayden EE, Markowski TW, Higgins L, Mashek DG. (2015) Quantitative analysis of the murine lipid droplet-associated proteome during diet-induced hepatic steatosis. J Lipid Res. 2015 Sep 28. pii: jlr.M056812.

Baldridge GD, Li YG, Witthuhn BA, Higgins L, Markowski TW, Baldridge AS, Fallon AM. (2015) Mosaic composition of ribA and wspB genes flanking the virB8-D4 operon in the Wolbachia supergroup B-strain, wStr. Arch Microbiol.

Fiers WD, Dodge GJ, Li y, Smith JL, Fecik RA  and Aldrich CC. (2015)  Tylosin polyketide synthase module 3: stereospecificity, stereoselectivity and steady-state kinetic analysis of β-processing domains via diffusible, synthetic substrates  Chem. Sci. 6: 5027-5033.

Bockman MR, Kalinda AS, Petrelli R, De la Mora-Rey T, Tiwari D, Liu F, Dawadi S, Nandakumar M, Rhee KY, Schnappinger D, Finzel BC, Aldrich CC. (2015) Targeting Mycobacterium tuberculosis Biotin Protein Ligase (MtBPL) with Nucleoside-Based Bisubstrate Adenylation Inhibitors.  J. Med. Chem. 2015, 58, 7349−7369

Diaz-Rodriguez V, Ganusova E, Rappe TM, Becker JM, Distefano MD. (2015) Synthesis of Peptides Containing C-Terminal Esters Using Trityl Side-Chain Anchoring: Applications to the Synthesis of C-Terminal Ester Analogs of the S.cerevisiae Mating Pheromone a-Factor. J Org Chem.

Skinner NE, Wroblewski MS, Kirihara JA, Nelsestuen GL, Seaquist ER. (2015) Sitagliptin Results in a Decrease of Truncated Apolipoprotein C1. Diabetes Ther.6(3):395-401.

Heinis FI, Vermillion KL, Andrews MT, Metzger JM. (2015) Myocardial performance and adaptive energy pathways in a torpid mammalian hibernator. Am J Physiol Regul Integr Comp Physiol. 2015 May 27.

Pendyala G, Periyasamy P, Callen S, Fox HS, Lisco SJ, Buch SJ. (2015) Chronic SIV and morphine treatment increases heat shock protein 5 expression at the synapse. J Neurovirol.

Nelson KM, Viswanathan K, Dawadi S, Duckworth BP, Boshoff HI, Barry CE, Aldrich CC. (2015) Synthesis and Pharmacokinetic Evaluation of Siderophore Biosynthesis Inhibitors for Mycobacterium tuberculosis.  J Med Chem. 

Jagtap PD, Blakely A, Murray K, Stewart S, Kooren J, Johnson JE, Rhodus NL, Rudney J, Griffin TJ. (2015) Metaproteomic analysis using the Galaxy framework. Proteomics. : 10.1002

Li J, Tao S, Orlando R, Murtaugh MP. (2015) N-glycosylation profiling of porcine reproductive and respiratory syndrome virus envelope glycoprotein 5. Virology.;478:86-98.

Li Y, Dodge GJ, Fiers WD, Fecik RA, Smith JL, Aldrich CC. (2015) Functional Characterization of a Dehydratase Domain from the Pikromycin Polyketide Synthase. J Am Chem Soc. 

Dawadi S, Viswanathan K, Boshoff HI, Barry CE 3rd, Aldrich CC. (2015) Investigation and conformational analysis of fluorinated nucleoside antibiotics targeting siderophore biosynthesis. J Org Chem.;80(10):4835-50.

Chang JW, Zhang W, Yeh HS, de Jong EP, Jun S, Kim KH, Bae SS, Beckman K, Hwang TH, Kim KS, Kim DH, Griffin TJ, Kuang R, Yong J. (2015) mRNA 3'-UTR shortening is a molecular signature of mTORC1 activation. Nat Commun. 6:7218. doi: 10.1038/ncomms821

Thumbigere-Math V, Michalowicz BS, de Jong EP, Griffin TJ, Basi DL, Hughes PJ, Tsai ML, Swenson KK, Rockwell L, Gopalakrishnan R. (2015) Salivary proteomics in bisphosphonate-related osteonecrosis of the jaw.  Oral Diseases 21(1):46-56.

Dahlin JL, Nissink JW, Strasser JM, Francis S, Higgins L, Zhou H, Zhang Z, Walters MA. (2015) PAINS in the assay: chemical mechanisms of assay interference and promiscuous enzymatic inhibition observed during a sulfhydryl-scavenging HTS.  J Med Chem. 12;58(5):2091-113.

Mahmoodi MM, Rashidian M, Zhang Y, Distefano MD. (2015) Application of meta- and para-Phenylenediamine as Enhanced Oxime Ligation Catalysts for Protein Labeling, PEGylation, Immobilization, and Release. Curr Protoc Protein Sci: 79:15.4.1-15.4.28.

Guhathakurta P, Prochniewicz E, Thomas DD. (2015) Amplitude of the actomyosin power stroke depends strongly on the isoform of the myosin essential light chain. PNAS USA. pii: 201420101. Proc Natl Acad Sci U S A. 14;112(15):4660-5. doi: 10.1073/pnas.1420101112.

Jing Y, Ni Z, Wu J, Higgins L, Markowski TW, Kaufman DS, Walcheck B. (2015) Identification of an ADAM17 Cleavage Region in Human CD16 (FcγRIII) and the Engineering of a Non-Cleavable Version of the Receptor in NK Cells. PLoS ON88E 10(3):

Burrill JS, Long EK, Reilly B, Deng Y, Armitage IM, Scherer PE, Bernlohr DA. (2015) Inflammation and ER Stress Regulate Branched-Chain Amino Acid Uptake and Metabolism in Adipocytes. Mol Endocrinol. 9(3):411-20.

McCarthy MR, Thompson AR, Nitu F, Moen RJ, Olenek MJ, Klein JC, Thomas DD. (2015) Impact of methionine oxidation on calmodulin structural dynamics. BBRC. 456(2):567-72.

Boekel J, Chilton JM, Cooke IR, Horvatovich PL, Jagtap PD, Käll L, Lehtiö J, Lukasse P, Moerland PD, Griffin TJ. (2015) Multi-omic data analysis using Galaxy. Nat Biotechnol. 33(2):137-139.

Elshafey R, Siaj M, Zourob M. (2015) DNA aptamers selection and characterization for development of label-free impedimetric aptasensor for neurotoxin anatoxin-a. Biosens Bioelectron. 68C:295-302.

Gao Y, Faris JD, Liu Z, Kim Y, Syme RA, Oliver RP, Xu SS, Friesen TL. (2015) Identification and characterization of the SnTox6-Snn6 interaction in the Parastagonospora nodorum - wheat pathosystem. Mol Plant Microbe Interact. 

Diener DR, Lupetti P, Rosenbaum JL. (2015) Proteomic Analysis of Isolated Ciliary Transition Zones Reveals the Presence of ESCRT Proteins. Curr Biol. 25(3):379-84.

Mahmoodi MM, Rashidian M, Zhang Y, Distefano MD. (2015) Application of meta- and para-Phenylenediamine as Enhanced Oxime Ligation Catalysts for Protein Labeling, PEGylation, Immobilization, and Release. Curr Protoc Protein Sci. 2 79:15.4.1-15.

Khan SA, Sathyanarayan A, Mashek MT, Ong KT, Wollaston-Hayden EE, Mashek DG. (2015) ATGL-Catalyzed Lipolysis Regulates SIRT1 to Control PGC-1α/PPAR-α Signaling. Diabetes. 64(2):418-26.

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Tan DT, Temme HR, Arnold WA, Novak PJ. (2014) Estrone degradation: Does organic matter (quality), matter?  Environ Sci Technol: 49(1):498-503

Svensson B, Oda T, Nitu FR, Yang Y, Cornea I, Chen-Izu Y, Fessenden JD, Bers DM, Thomas DD, Cornea RL. (2014) FRET-Based Trilateration of Probes Bound within Functional Ryanodine Receptors. Biophys J.107(9):2037-48.

Sauer M-AA, Xu B,Sutton F. (2014) Metabolic labeling with stable isotope nitrogen (15N) to follow amino acid and protein turnover of three plastid proteins in Chlamydomonas reinhardtii. Proteome Sci. 12: 14. Published online 2014 Mar 3. doi: 10.1186/1477-5956-12-14

Lamont EA, Janagama HK, Ribeiro-Lima J, Vulchanova L, Seth M, Yang M, Kurmi K, Waters WR, Thacker T, Sreevatsan S. (2014) Circulating Mycobacterium bovis peptides and host response proteins as biomarkers for unambiguous detection of subclinical infection. J Clin Microbiol. 52(2):536-43.

Moen RJ, Cornea S, Oseid DE, Binder BP, Klein JC, Thomas DD. (2014)  Redox-sensitive residue in the actin-binding interface of myosin. Biochem Biophys Res Commun. 24;453(3):345-9.

Zhang X,  DeHaan LR,  Higgins LA,  Markowski TW, Wyse DL,  Anderson JA. (2014) New insights into high-molecular-weight glutenin subunits and sub-genomes of the perennial crop Thinopyrum intermedium (Triticeae). Journal of Cereal Science. 59(2):203-210.

Li Y, Fiers WD, Bernard SM, Smith JL, Aldrich CC, Fecik RA. (2014) Polyketide Intermediate Mimics as Probes for Revealing Cryptic Stereochemistry of Ketoreductase Domains.  ACS Chem Biol. Oct 9.

Jagtap PD , Johnson JE, Onsongo G, Sadler FW, Murray K, Wang Y, Sheynkman GM, Bandhakavi S, Smith LM, and Griffin TJ. (2014) Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework.J. Proteome Res., J 10.1021/pr500812t

Bhargava M, Becker TL, Viken KJ, Jagtap PD, Dey S, Steinbach MS, Wu B, Kumar V, Bitterman PB, Ingbar DH, Wendt CH. (2014)  Proteomic Profiles in Acute Respiratory Distress Syndrome Differentiates Survivors from Non-Survivors. PLoS One.9(10):e109713.

Bloch SE and Schmidt-Dannert C. (2014) Construction of a Chimeric Biosynthetic Pathway for the De Novo Biosynthesis of Rosmarinic Acid in Escherichia coli ChemBioChem 10.1002/cbic.

Liu LK, Finzel B. (2014) High-resolution crystal structures of alternate forms of the human CD44 hyaluronan-binding domain reveal a site for protein interaction. Acta Crystallogr F Struct Biol Commun.70(Pt 9):1155-61.

Ablorh NA, Dong X, James ZM, Xiong Q, Zhang J, Thomas DD, Karim CB. (2014) Synthetic Phosphopeptides Enable Quantitation of the Content and Function of Phospholamban's four Phosphorylation States in Cardiac Muscle.  J Biol Chem. Sep 4. pii: jbc.M114.556621.

Gabrielse K, Gangar A, Kumar N,  Lee JC, Fegan A, Shen  JJ, Li Q, Vallera D, Wagner CR. (2014) Reversible re-programing of cell-cell interactions. Angew Chem Int Ed Engl;53(20):5112-6.

Ochocki JD, Igbavboa U, Wood WG, Arriaga EA, Wattenberg EV, Distefano MD. (2014) Evaluation of prenylated peptides for use in cellular imaging and biochemical analysis. Methods Mol Biol. 2014;1088:213-23.

Van Gough D, Wheeler JS, Cheng S, Stevens MJ, Spoerke ED. (2014) Supramolecular assembly of asymmetric self-neutralizing amphiphilic Peptide wedges. Langmuir.(30):9201-9. doi:

Sheynkman GM, Johnson JE, Jagtap PD, Shortreed MR, Onsongo G, Frey BL, Griffin TJ, Smith LM. (2014) Using galaxy-P to leverage RNA-Seq for the discovery of novel protein variations. BMC Genomics. 22;15(1):703.

Lin-Moshier Y, Keebler MV, Hooper R, Boulware MJ, Liu X, Churamani D, Abood ME, Walseth TF1, Brailoiu E, Patel S, Marchant JS. (2014) The Two-pore channel (TPC) interactome unmasks isoform-specific roles for TPCs in endolysosomal morphology and cell pigmentation. Proc Natl Acad Sci U S A.111(36):13087-92.

Thacker T, Sreevatsan S. (2014) Circulating Mycobacterium bovis Peptides and Host Response Proteins as Biomarkers for Unambiguous Detection of Subclinical Infection. J Clin Microbiol. 52(2):536-43.

Stone MD, Harvey SB, Nelsestuen GL, Reilly C, Hertz MI, Wendt CH. (2014) Elevated peptides in lung lavage fluid associated with bronchiolitis obliterans syndrome. PLoS One.  9(1):e84471.

Baldridge GD, Baldridge AS, Witthuhn BA, Higgins L, Markowski TW, Fallon AM. (2014) Proteomic profiling of a robust Wolbachia infection in an Aedes albopictus mosquito cell line. Mol Microbiol (3):537-56.

Boylan KL, Afiuni-Zadeh S, Geller MA, Hickey K, Griffin TJ, Pambuccian SE, Skubitz AP. (2014) A feasibility study to identify proteins in the residual Pap test fluid of women with normal cytology by mass spectrometry-based proteomics. Clin Proteomics.11(1):30. 11-30.

Fallon AM, Baldridge GD, Carroll EM, Kurtz CM. (2014) Depletion of host cell riboflavin reduces Wolbachia levels in cultured mosquito cells.  In Vitro Cell Dev Biol Anim. 50(8):707-13.

Frohnert BI, Long EK, Hahn WS, and Bernlohr DA. (2014) Glutathionylated Lipid Aldehydes Are Products of Adipocyte Oxidative Stress and Activators of Macrophage Inflammation.  Diabetes 63:1 89-100

Lund TC, Patrinostro X, Kramer AC, Stadem P, Higgins L, Markowski TW, Wroblewski MS, Lidke DS, Tolar J, Blazar BR. (2014) sdf1 expression reveals a source of perivascular-derived mesenchymal stem cells in zebrafish. Stem Cells 32(10):2767-79.

Dong X, Thomas DD. (2014) Time-resolved FRET Reveals the Structural Mechanism of SERCA-PLB Regulation.  Biochem Biophys Res Commun (14)00846-8.

Yang Y, Rhodus NL, Ondrey FG, Wuertz BR, Chen X, Zhu Y, Griffin TJ. (2014) Quantitative proteomic analysis of oral brush biopsies identifies secretory leukocyte protease inhibitor as a promising, mechanism-based oral cancer biomarker. PLoS One. 2014 Apr 18;9(4):e95389.

Lewis AK, James ZM, McCaffrey JE, Braun AR, Karim CB, Thomas DD, Sachs JN. (2014) Open and closed conformations of the isolated transmembrane domain of death receptor 5 support a new model of activation. Biophys J.  18;106(6):L21-4.

Yerramsetty V, Gallaher DD, Ismail B. (2014) Malonylglucoside Conjugates of Isoflavones Are Much Less Bioavailable Compared with Unconjugated β-Glucosidic Forms in Rats. J Nutr. May 2014 jn.114.190801

Liu LK, Finzel BC. (2014) Fragment-Based Identification of an Inducible Binding Site on Cell Surface Receptor CD44 for the Design of Protein-Carbohydrate Interaction Inhibitors.  J Med Chem. 2014 Mar 7.

Palsuledesai CC, Ochocki JD, Markowski TW, Distefano MD. (2014) A combination of metabolic labeling and 2D-DIGE analysis in response to a farnesyltransferase inhibitor facilitates the discovery of new prenylated proteins.  Mol Biosyst. 2014 Feb 28.

Van Riper SK, de Jong EP , Higgins LA , Carlis  JV, Griffin TJ. (2014)  Improved intensity-based label free quantification via proximity-based intensity normalization (PIN) J. Proteome Res.,

Gnanandarajah JS, Gillis PA, Hernandez-Alvarado N, Higgins L, Markowski TW, Sung H, Lumley S, Schleiss MR. (2014). Identification by Mass Spectrometry and Immune Response Analysis of Guinea Pig Cytomegalovirus (GPCMV) Pentameric Complex Proteins GP129, 131 and 133. Viruses 13;6(2):727-51..

Lamont EA, Janagama HK, Ribeiro-Lima J, Vulchanova L, Seth M, Yang M, Kurmi K, Waters WR, Vermillion KL, Lidberg KA, Gammill LS. (2014) Cytoplasmic protein methylation is essential for neural crest migration. J Cell Biol. 2013 Dec 30.

2013 (47) 

Stewart M, Baker CF, Sorensen PW. (2013) Behavioral analysis of pheromones in fish. Methods Mol Biol. 2013;1068:293-305. doi: 10.1007/978-1-62703-619-1_22.

Wendt C, Tram K, Price A, England K, Stiehm A, Panoskaltsis-Mortari A. (2013) Club cell secretory protein improves survival in a murine obliterative bronchiolitis model. Am J Physiol Lung Cell Mol Physiol. 305(9):L642-50.

Aukema KG, Makris TM, Stoian SA, Richman JE, Münck E, Lipscomb JD, Wackett LP. (2013) Cyanobacterial aldehyde deformylase oxygenation of aldehydes yields n-1 aldehydes and alcohols in addition to alkanes. ACS Catal.  4;3(10):2228-2238.

Robbins ML1, Roy A, Wang PH, Gaffoor I, Sekhon RS, de O Buanafina MM, Rohila JS, Chopra S. (2013) Comparative proteomics analysis by DIGE and iTRAQ provides insight into the regulation of phenylpropanoids in maize.  J Proteomics. 20;93:254-75.

Yu L, O'Sullivan DJ. (2013) Production of galactooligosaccharides using a hyperthermophilic β-galactosidase in permeabilized whole cells of Lactococcus lactis. J Dairy Sci.(13) 867-9.

Makris TM, Knoot CJ, Wilmot CM, Lipscomb JD. (2013)  Structure of a dinuclear iron cluster-containing β-hydroxylase active in antibiotic biosynthesis. Biochemistry. 24;52(38):6662-71.

Satori CP, Henderson MM, Krautkramer EA, Kostal V, Distefano MD, Arriaga EA. (2013) Bioanalysis of eukaryotic organelles.  Chem Rev. 10;113(4):2733-811.

Thumbigere-Math V, Michalowicz B, de Jong E, Griffin T, Basi D, Hughes P, Tsai M, Swenson K, Rockwell L, Gopalakrishnan R. (2013) Salivary proteomics in bisphosphonate-related osteonecrosis of the jaw. Oral Dis.  10.12204.

Wilson MB, Spivak M, Hegeman AD, Rendahl A, Cohen JD. (2013) Metabolomics reveals the origins of antimicrobial plant resins collected by honey bees.PLoS One. 18;8(10):e77512.

Vostrikov VV, Mote KR, Verardi R, Veglia G. (2013) Structural Dynamics and Topology of Phosphorylated Phospholamban Homopentamer Reveal Its Role in the Regulation of Calcium Transport. Structure 0969-2126(13)00358-4.

Moen RJ, Klein JC, Thomas DD. (2013) Electron Paramagnetic Resonance Resolves Effects of Oxidative Stress on Muscle Proteins.Exerc Sport Sci Rev. 2013 Nov 1.

Sharpe KM, Premsukh MD, Townsend D. (2013) Alterations of dystrophin-associated glycoproteins in the heart lacking dystrophin or dystrophin and utrophin.J Muscle Res Cell Motil. 

Dodge AG, Preiner CS, Wackett LP. (2013) Expanding the Cyanuric Acid Hydrolase Protein Family to the Fungal Kingdom. J Bacteriol. 2013 Sep 13.

Rashidian M, Kumarapperuma SC, Gabrielse K, Fegan A, Wagner CR, Distefano MD. (2013) Simultaneous Dual Protein Labeling Using a Triorthogonal Reagent. J Am Chem Soc. 17.

Wendt CH, Tram KV, Price AP, England KA, Stiehm A, Panoskaltsis-Mortari A. (2013) Club Cell Secretory Protein improves Survival in a Murine Obliterative Bronchiolitis Model.  Am J Physiol Lung Cell Mol Physiol. 2013 Aug 30.

Lund TC, Kobs AJ, Kramer A, Nyquist M, Kuroki MT, Osborn J, Lidke DS, Low-Nam ST, Blazar BR, Tolar J. (2013) Bone marrow stromal and vascular smooth muscle cells have chemosensory capacity via bitter taste receptor expression.PLoS One. 2013;8(3):e58945.

Gustavsson M, Verardi R, Mullen DG, Mote KR, Traaseth NJ, Gopinath T, Veglia G. (2013) Allosteric regulation of SERCA by phosphorylation-mediated conformational shift of phospholamban. Proc Natl Acad Sci U S A.

Tran PV, Dakoji S, Reise KH, Storey KK, Georgieff MK. (2013) Fetal iron deficiency alters proteome of adult rat hippocampal synaptosomes. Am J Physiol Regul Integr Comp Physiol. 2013

Robinson SR, Abrahante JE, Johnson CR, Murtaugh MP. (2013) Purifying selection in Porcine reproductive and respiratory syndrome virus ORF5a protein influences variation in envelope glycoprotein 5 glycosylation. Infect Genet Evol.doi:(13)00363-8

Frohnert BI, Long EK, Hahn WS, Bernlohr DA. (2013) Glutathionylated Lipid Aldehydes are Products of Adipocyte Oxidative Stress and Activators of Macrophage Inflammation .Diabetes. 

Long EK, Hellberg K, Foncea R, Hertzel AV, Suttles J, Bernlohr DA. (2013) Fatty acids induce leukotriene C4 synthesis in macrophages in a fatty acid binding protein-dependent manner. Biochim Biophys Acta.1831(7):1199-207.

Bhargava M, Dey S, Becker TL, Steinbach MS, Wu B, Lee SM, Higgins L, Kumar V, Bitterman PB, Ingbar DH, Wendt CH. (2013) Protein Expression Profile of Rat Type Two Alveolar Epithelial Cells During Hyperoxic Stress and Recovery. Am J Physiol Lung Cell Mol Physiol. 2013 Sep 6.

Satish Tammana TV, Tammana D, Diener DR, Rosenbaum J. (2013) Centrosomal protein CEP104/Chlamydomonas FAP256 moves to the ciliary tip during cilia assembly.  J Cell Sci. Aug

Beckmann JF, Fallon AM. (2013)  Detection of the Wolbachia Protein WPIP0282 in Mosquito Spermathecae: Implications for Cytoplasmic Incompatibility.  Insect Biochem Mol Biol (13)00125-2.

Mahmoodi MM, Rashidian M, Dozier JK, Distefano MD. (2013) Chemoenzymatic site-specific reversible immobilization and labeling of proteins from crude cellular extract without prior purification using oxime and hydrazine ligation. Curr Protoc Chem Biol.5(2):89-109.

De la Mora-Rey T, Guenther BD, Finzel BC. (2013) The structure of the TOG-like domain of Drosophila melanogaster Mast/Orbit. Acta Crystall Sect F Struct Biol Cryst Comm. 69( 7):723-9.

Yukl ET, Jensen LM, Davidson VL, Wilmot CM. (2013) Structures of MauG in complex with quinol and quinone MADH. Acta Crystallogr Sect F Struct Biol Cryst Commun. 69(7):738-43.

Long EK, Olson DM, Bernlohr DA. (2013) High Fat Diet Induces Changes in Adipose Tissue trans-4-Oxo-2-Nonenal and trans-4-Hydroxy-2-Nonenal Levels in a Depot-Specific Manner.Free Radic Biol Med. 2013.05.030. 

Ran Q, Badgley BD, Dillon N, Dunny GM, Sadowsky MJ. (2013) Occurrence, genetic diversity, and persistence of enterococci in a lake superior watershed. Appl Environ Microbiol. 79(9):3067-75.

Yerramsetty V, Roe M, Cohen J, Hegeman A, Ismail B. (2013) Development of a simple, fast, and accurate method for the direct quantification of selective estrogen receptor modulators using stable isotope dilution mass spectrometry. J Agric Food Chem. 61(29):7028-37.

Bower R, Tritschler D, Vanderwaal K, Perrone CA, Mueller J, Fox L, Sale WS, Porter ME. (2013) The N-DRC forms a conserved biochemical complex that maintains outer doublet alignment and limits microtubule sliding in motile axonemes.  Mol Biol Cell.24(8):1134-52.

Wirschell M, Olbrich H, Werner C, Tritschler D, Bower R, Sale WS, Loges NT, Pennekamp P, Lindberg S, Stenram U, Carlén B, Horak E, Köhler G, Nürnberg P, Nürnberg G, Porter ME, Omran H. (2013) The nexin-dynein regulatory complex subunit DRC1 is essential for motile cilia function in algae and humans.  Nat Genet.45(3):262-8.

Cabrera JA, Butterick TA, Long EK, Ziemba EA, Anderson LB, Duffy C, Sluiter W, Duncker DJ, Zhang J, Chen Y, Ward HB, Kelly RF, McFalls EO. (2013) Reduced Expression of Mitochomarkondrial Electron Transport Chain Proteins from Hibernating Hearts Relative to Ischemic Preconditioned Hearts in the Second Window of Protection.  J Mol Cell Cardiol. 

Margatan W, Ruud K, Wang Q, Markowski T, Ismail B. (2013) Angiotensin Converting Enzyme Inhibitory Activity of Soy Protein Subjected to Selective Hydrolysis and Thermal Processing.J Agric Food Chem. 2013 Mar 29.

Eberle CA, Anderson NO, Clasen BM, Hegeman AD, Smith AG. (2013) PELPIII: the class III pistil-specific extensin-like Nicotiana tabacum proteins are essential for interspecific incompatibility. Plant J. Jun;74(5):805-14.

Lund TC, Kobs AJ, Kramer A, Nyquist M, Kuroki MT, Osborn J, Lidke DS, Low-Nam ST, Blazar BR, Tolar J. (2013) Bone Marrow Stromal and Vascular Smooth Muscle Cells Have Chemosensory Capacity via Bitter Taste Receptor Expression. PLoS One 8(3):e58945.

Yukl ET, Liu F, Krzystek J, Shin S, Jensen LM, Davidson VL, Wilmot CM, Liu A. (2013) Diradical intermediate within the context of tryptophan tryptophylquinone biosynthesis. Proc Natl Acad Sci USA. 

Wilmot CM, Yukl ET. (2013) MauG: a di-heme enzyme required for methylamine dehydrogenase maturation. Dalton Trans.42(9):3127-35.

Jagtap P, Goslinga J, Kooren JA, McGowan T, Wroblewski MS, Seymour SL, Griffin TJ. (2013) A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies.  Proteomics. doi: 10.1002/pmic.201200352P.

Van Riper SK, de Jong EP, Carlis JV, Griffin TJ. (2013) Mass spectrometry-based proteomics: basic principles and emerging technologies and directions. Adv Exp Med Biol. 990:1-35.

Yin DT, Purpero VM, Fujii R, Jing Q, Kazlauskas RJ. (2013) New Structural Motif for Carboxylic Acid Perhydrolases. Chemistry. doi: 10.1002/chem.201202027.

Hamilton MJ, Weingarden AR, Unno T, Khoruts A, Sadowsky MJ. (2013) High-throughput DNA sequence analysis reveals stable engraftment of gut microbiota following transplantation of previously frozen fecal bacteria. Gut Microbes.;4(2).

Wilson DJ, Shi C, Teitelbaum AM, Gulick AM, Aldrich CC. (2013) Characterization of AusA: A Dimodular Nonribosomal Peptide Synthetase Responsible for Production of Aureusimine Pyrazinones. Biochemistry. 52(5):926-37.

Kumar N, Ippel H, Weber C, Hackeng T, Mayo KH. (2013) Protein lysine-Nζ alkylation and O-phosphorylation mediated by DTT-generated reactive oxygen species. Protein Sci. 12. doi: 10.1002/pro.2214.

Fallon AM,  Baldridge GD, Higgins LA,  Witthuhn BA. (2013) Wolbachia from the planthopper Laodelphax striatellus establishes a robust, persistent, streptomycin-resistant infection in clonal mosquito cells.  In Vitro Cell Dev Biol—Animal 49:66–73

Beckmann JF, Markowski TW, Witthuhn BA, Fallon AM. (2013) Detection of the Wolbachia-encoded DNA binding protein, HU beta, in mosquito gonads. Insect Biochemistry and Molecular Biology 43 (2013) 272-279

Lin-Moshier Y, Sebastian PJ, Higgins L, Sampson ND, Hewitt JE, Marchant JS. (2013) Re-evaluation of the role of calcium homeostasis endoplasmic reticulum protein (CHERP) in cellular calcium signaling.  J Biol Chem.:288(1):355-67. 

2012 (31)

Manfredi JM, Boyce M, Malone ED, Anderson C, Anderson LB, Trumble TN. (2012) Steroid diffusion into the navicular bursa occurs in horses affected by palmar foot pain. Vet Rec. 22-29;171(25):642.

Dings  RPM, Kumar N, Miller M, Loren M, Rangwala H, Hoye TR, Mayo KH. (2012) Structure-based optimization of angiostatic agent 6DBF7, an allosteric antagonist of galectin-1.   J Pharmacol Exp Ther. 

Dings RPM, Miller MC, Nesmelova I, Astorgues-Xerri L, Kumar N, Serova M, Chen X, Raymond E, Hoye TR, Mayo KH. (2012) Antitumor agent calixarene 0118 targets human galectin-1 as an allosteric inhibitor of carbohydrate binding.  J Med Chem. 14;55(11):5121-9

Reed JR, Stone MD, Beadnell TC, Ryu Y, Griffin TJ, Schwertfeger KL. (2012) Fibroblast Growth Factor Receptor 1 Activation in Mammary Tumor Cells Promotes Macrophage Recruitment in a CX3CL1-Dependent Manner. PLoS One.7(9):e45877.

Kim YC, Jahre N, Stone MD, Udeshi ND, Markowski TW, Witthuhn BA, Shabanowitz J, Hunt DF, Olszewski NE. (2012) Identification and Origin of N-linked β-D-N-acetylglucosamine Monosaccharide Modifications on Arabidopsis thaliana Proteins. Plant Phys  pp.112.208900

Fan J, Zhang Y, Chuang-Smith ON, Frank KL, Guenther BD, Kern M, Schlievert PM, Herzberg MC. (2012) Ecto-5'-nucleotidase: a candidate virulence factor in Streptococcus sanguinis experimental endocarditis. PLoS One.7(6):e38059.

James ZM, McCaffrey JE, Torgersen KD, Karim CB, Thomas DD. (2012) Protein-protein interactions in calcium transport regulation probed by saturation transfer electron paramagnetic resonance. Biophys J. 19;103(6):1370-8.

de Jong EP, Xie H, Onsongo G, Stone MD, Chen X-B, Kooren JA, Refsland EW, Griffin RJ,  Ondrey FG, Wu B, Le CT, Rhodus NL, Carlis JV,  Griffin TJ. (2012) Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions. PLoS ONE 5(6)11148  

Zhang Y, Sinaiko AR, Nelsestuen GL. (2012) Glycoproteins and glycosylation: apolipoprotein c3 glycoforms by top-down maldi-tof mass spectrometry. Methods Mol Biol. 909:141-50.

de Jong EP, Griffin TJ. (2012) Online Nanoscale ERLIC-MS Outperforms RPLC-MS for Shotgun Proteomics in Complex Mixtures. J Proteome Res. 5;11(10):5059-64.

Bandhakavi S,  Van Riper SK,  Tawfik PN,  Stone MD, Haddad T,  Rhodus NL,  Carlis JV,  Griffin TJ. (2012) Hexapeptide libraries for enhanced protein PTM identification and relative abundance profiling in whole human saliva.  Journal of Proteome Research. 10(3):1052-61.

Song KY, Choi HS, Law PY, Wei LN, Loh HH. (2012) Post-transcriptional regulation of mu-opioid receptor: role of the RNA-binding proteins heterogeneous nuclear ribonucleoprotein H1 and F. Cell Mol Life Sci. 69(4):599-610.

Kang DH, Song KY, Choi HS, Law PY, Wei LN, Loh HH. (2012) Novel dual-binding function of a poly (C)-binding protein 3, transcriptional factor which binds the double-strand and single-stranded DNA sequence. Gene. 10;501(1):33-8.

Cabrera JA, Ziemba EA, Colbert R, Anderson LB, Sluiter W, Duncker DJ, Butterick TA, Sikora J, Ward HB, Kelly RF, McFalls EO. (2012) Altered expression of mitochondrial electron transport chain proteins and improved myocardial energetic state during late ischemic preconditioning. Am J Physiol Heart Circ Physiol. 302(10):H1974-82.

Pravetoni M, Le Naour M, Harmon TM, Tucker AM, Portoghese PS, Pentel PR. (2012) An oxycodone conjugate vaccine elicits drug-specific antibodies that reduce oxycodone distribution to brain and hot-plate analgesia. J Pharmacol Exp Ther. 341(1):225-32

Yin DT, Kazlauskas RJ. (2012) Revised molecular basis of the promiscuous carboxylic acid perhydrolase activity in serine hydrolases. Chemistry 18(26):8130-9.

Valley CC, Lewis AK, Mudaliar DJ, Perlmutter JD, Braun AR, Karim CB, Thomas DD, Brody JR, Sachs JN. (2012) Tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) induces death receptor 5 networks that are highly organized. J Biol Chem 287(25):21265-78.

Abate-Pella D, Zeliadt NA, Ochocki JD, Warmka JK, Dore TM, Blank DA, Wattenberg EV, Distefano MD. (2012) Photochemical modulation of Ras-mediated signal transduction using caged farnesyltransferase inhibitors: activation by one- and two-photon excitation. Chembiochem. 13(7):1009-16.

Wiederin JL, Yu F, Donahoe RM, Fox HS, Ciborowski P, Gendelman HE. (2012) Changes in the plasma proteome follows chronic opiate administration in simian immunodeficiency virus infected rhesus macaques. Drug Alcohol Depend. 1;120(1-3):105-12.

Dong X, Meinhardt SW, Schwarz PB. (2012)  Isolation and characterization of two endoxylanases from Fusarium graminearum.  J Agric Food Chem. 2012 Mar 14;60(10):2538-45.

Lei T, Yang J, Zheng L, Markowski T, Witthuhn BA, Ji Y. (2012) The essentiality of staphyl Gcp is independent of its repression of branched-chain amino acids biosynthesis.  PLOS ONE 7(10)

Seffernick JL, Erickson JS, Cameron SM, Cho S, Dodge AG, Richman JE, Sadowsky MJ, Wackett LP. (2012) Defining Sequence Space and Reaction Products within the Cyanuric Acid Hydrolase (AtzD)/Barbiturase Protein Family. J Bacteriol. 194(17):4579-88.

Templeton DL, Mosser KH, Chen CN, Stone MD, John R, Dengel DR, Thompson LV. (2012) Effects of Left Ventricular Assist Device (LVAD) Placement on Myocardial Oxidative Stress Markers. Heart Lung Circ.21(9):586-97

Duckworth BP, Wilson DJ, Nelson KM, Boshoff HI, Barry CE, and Aldrich CC. (2012) Development of a Selective Activity-Based Probe for Adenylating Enzymes: Profiling MbtA Involved in Siderophore Biosynthesis from Mycobacterium tuberculosis ACS Chem. Biol. 10.1021

Jagtap P, McGowan T, Bandhakavi S, Tu ZJ, Seymour S, Griffin TJ, Rudney JD. (2012) Deep metaproteomic analysis of human salivary supernatant. Proteomics 12(7):992-1001.

Kim YM, Stone M, Hwang TH, Kim YG, Dunlevy JR, Griffin TJ, Kim DH. (2012) SH3BP4 Is a Negative Regulator of Amino Acid-Rag GTPase-mTORC1 Signaling. Mol Cell. 29;46(6):833-46.

Yoder AR, Robinson JW, Dickey DM, Andersland J, Rose BA, Stone MD, Griffin TJ, Potter LR. (2012) A functional screen provides evidence for a conserved, regulatory, juxtamembrane phosphorylation site in guanylyl cyclase a and B. PLoS One. 2012;7(5).

Jagtap P, Bandhakavi S, Higgins L, McGowan T, Sa R, Stone MD, Chilton J, Arriaga EA, Seymour SL, Griffin TJ. (2012) Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm. Proteomics. 12(11):1726-30.

Curtis JM, Hahn WS, Stone MD, Inda JJ, Droullard DJ,. Kuzmicic JP, Donoghue MA, Long EK, Armien AG, Lavandero S, Arriaga E, Griffin TJ, and Bernlohr, DA. (2012) Protein carbonylation and adipocyte mitochondria function. J Biol Chem. 10.1074

Feng M, Jensen LM, Yukl ET, Wei X, Liu A, Wilmot CM, Davidson VL. (2012) Proline 107 Is a Major Determinant in Maintaining the Structure of the Distal Pocket and Reactivity of the High-Spin Heme of MauG. Biochemistry 51(8):1598-606.

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Shi C, Geders TW, Park SW, Wilson DJ, Boshoff HI, Abayomi O, Barry CE 3rd, Schnappinger D, Finzel BC, Aldrich CC. (2011) Mechanism-based inactivation by aromatization of the transaminase BioA involved in biotin biosynthesis in Mycobaterium tuberculosis. J Am Chem Soc.133(45):18194-201.

Zhang J, Nkhata K, Shaik AA, Wang L, Li L, Zhang Y, Higgins LA, Kim KH, Liao JD, Xing C, Kim SH, Lu J. (2011) Mouse prostate proteome changes induced by oral pentagalloylglucose treatment suggest targets for cancer chemoprevention. Curr Canc Drug Targets. 11(7):787-98.

Mahoney DW, Therneau TM, Heppelmann CJ, Higgins L, Benson LM, Zenka RM, Jagtap P, Nelsestuen GL, Bergen HR, Oberg AL. (2011) Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides. J Proteome Res. 10(9):4325-33.

Yang L, Rudser KD, Higgins L, Rosen HR, Zaman A, Corless CL, David L, Gourley GR. (2011) Novel biomarker candidates to predict hepatic fibrosis in hepatitis C identified by serum proteomics. Dig Dis Sci.56(11):3305-15.

Zhang J, Wang L, Zhang Y, Li L, Higgins L, Lü J. (2011) Lobe-specific proteome changes in the dorsal-lateral and ventral prostate of TRAMP mice versus wild-type mice. Proteomics. 11(12):2542-9.

Ha KN, Masterson LR, Hou Z, Verardi R, Walsh N, Veglia G, Robia SL. (2011) Lethal Arg9Cys phospholamban mutation hinders Ca2+-ATPase regulation and phosphorylation by protein kinase A. Proc Natl Acad Sci 15;108(7):2735-40.

Gustavsson M, Traaseth NJ, Veglia G. (2011) Probing ground and excited states of phospholamban in model and native lipid membranes by magic angle spinning NMR spectroscopy. Biochim Biophys Acta. 1818(2):146-53.

Kyro K, Manandhar SP, Mullen D, Schmidt WK, Distefano MD. (2011)  Photoaffinity labeling of Ras converting enzyme using peptide substrates that incorporate benzoylphenylalanine (Bpa) residues: Improved labeling and structural implications. Bioorganic & Medicinal Chemistry 19 (24)7559–7569.

Cao Y, Posokhova E, and Martemyanov KA. (2011) TRPM1 Forms Complexes with Nyctalopin In Vivo and Accumulates in Postsynaptic Compartment of ON-Bipolar Neurons in mGluR6-Dependent Manner. The Journal of Neuroscience 31(32):11521–11526.

Tarboush NA, Jensen LM, Yukl ET, Geng J, Liu A, Wilmot CM, Davidson VL. (2011) Mutagenesis of tryptophan199 suggests that hopping is required for MauG-dependent tryptophan tryptophylquinone biosynthesis. Proc Natl Acad Sci U S A. 108(41):16956-61

Klein JC, Moen RJ, Smith EA, Titus MA, and Thomas DD. (2011) Structural and Functional Impact of Site-Directed Methionine Oxidation in Myosin Biochemistry.50(47):10318-27

Rodriguez Estrada AE, Hegeman A, Corby KH, May G. (2011) In vitro interactions between Fusarium verticillioides and Ustilago maydis through real-time PCR and metabolic profiling. Fungal Genet Biol. 49(7):578-87.

Lei Y, Zhang Y, Guenther BD, Kreth J, Herzberg MC. (2011) Mechanism of adhesion maintenance by methionine sulphoxide reductase in Streptococcus gordonii.  Mol Microbiol. 80(3):726-38.

 Mullen DG, Kyro K, Hauser M, Gustavsson M, Veglia G, Becker JM, Naider F, Distefano MD. (2011) Synthesis of a-factor peptide from Saccharomyces cerevisiae and photoactive analogues via Fmoc solid phase methodology.  Bioorg Med Chem.19(1):490-7.

Lim H, Sorensen PW. (2011) Polar metabolites synergize the activity of prostaglandin f(2α) in a species-specific hormonal sex pheromone released by ovulated common carp.  J Chem Ecol.37(7):695-704.

Levesque HM, Scaffidi D, Polkinghorne CN, Sorensen PW. (2011) A multi-component species identifying pheromone in the goldfish. J Chem Ecol. 37(2):219-27.

Lin YC, Anderson MJ, Kohler PL, Strandberg KL, Olson ME, Horswill AR, Schlievert PM, Peterson ML. (2011) Pro-inflammatory exoprotein characterization of toxic shock syndrome Staphyococcus aureus  Biochemistry. 2011 Jul 12.

Moen RJ, Johnsrud DO, Thomas DD, Titus MA. (2012) Characterization of a myosin VII MyTH/FERM domain.  J Mol Biol. 413(1):17-23.

Brickman TJ, Cummings CA, Liew SY, Relman DA, Armstrong SK. (2011) Transcriptional profiling of the iron starvation response in Bordetella pertussis provides new insights into siderophore utilization and virulence gene expression. J Bacteriol.  193(18): 4798–4812

Frohnert BI, Sinaiko AR, Serrot FJ, Foncea RE, Moran A, Ikramuddin S, Choudry U, Bernlohr DA. (2011) Increased Adipose Protein Carbonylation in Human Obesity. Obesity 19(9):1735-41.

Liang X, Hall JW, Yang J, Yan M, Doll K, Bey R, Ji Y. (2011) Identification of Single Nucleotide Polymorphisms Associated with Hyperproduction of Alpha-Toxin in Staphylococcus aureus.  PLoS One 6(4):e18428.

Heilmann SM, Jader LR, Harned LA, Sadowsky MJ, Schendel FJ, Lefebvre PA, von Keitz MG, Valentas KJ. (2011) Hydrothermal carbonization of microalgae II. Fatty acid, char, and algal nutrient products. Applied Energy. V 88,  (10) 3286-3290

Posokhova E, Song H, Belcastro M, Higgins L, Bigley LR, Michaud NA, Martemyanov KA, Sokolov M. (2011) Disruption of the chaperonin containing TCP-1 function affects protein networks essential for rod outer segment morphogenesis and survival. Mol Cell Proteomics.  10(1):

Kelly RF, Cabrera JA, Ziemba EA, Crampton M, Anderson LB, McFalls EO, Ward HB. (2011) Continued depression of maximal oxygen consumption and mitochondrial proteomic expression despite successful coronary artery bypass grafting in a swine model of hibernation.  J Thorac Cardiovasc Surg.  1(1):261-8.

Zhang J, Wang L, Li G, Anderson LB, Xu Y, Witthuhn B, Lu J. (2011) Mouse Prostate Proteomes Are Differentially Altered by Supranutritional Intake of Four Selenium Compounds. Nutr Cancer. 63(5):778-89

Lockamy EL, Cornea RL, Karim CB, Thomas DD. (2011) Functional and physical competition between phospholamban and its mutants provides insight into the molecular mechanism of gene therapy for heart failure. Biochem Biophys Res Commun. 13;408(3):388-92.

Hellestad VJ, Witthuhn BA, Fallon AM. (2011) The insect repellent DEET (N,N-diethyl-3- methylbenzamide) increases the synthesis of glutathione S-transferase in cultured mosquito cells. Cell Biol Toxicol (2):149-57.

Chen WP, Yang XY, Harms GL, Gray WM, Hegeman AD, Cohen JD. (2011)  An automated growth enclosure for metabolic labeling of Arabidopsis thaliana with 13C-carbon dioxide - an in vivo labeling system for proteomics and metabolomics research. Proteome Sci. 10;9(1):9.

Johnson CR, Griggs TF, Gnanandarajah JS, Murtaugh MP. (2011) Novel Structural Protein in Porcine Reproductive and Respiratory Syndrome Virus Encoded in an Alternative Open Reading Frame 5 Present in All Arteriviruses. J Gen Virol. 92(Pt 5):1107-16

Stone MD, Chen XB, McGowan T, Bandhakavi S, Cheng B, Rhodus N, Griffin TJ. (2011) Large-Scale Phosphoproteomics Analysis of Whole Saliva Reveals a Distinct Phosphorylation Pattern. J Proteome Res. 10(4):1728-36

Bandhakavi S, Markowski TW, Xie H, Griffin TJ. (2011) Three-dimensional peptide fractionation for highly sensitive nanoscale LC-based shotgun proteomic analysis of complex protein mixtures. higgMethods Mol Biol. 790:47-56.

Griffin TJ, Bandhakavi S. (2011) Dynamic range compression: a solution for proteomic biomarker discovery?  Bioanalysis (18):2053-6.

Kooren JA, Rhodus NL, Tang C, Jagtap PD, Horrigan BJ, Griffin TJ. (2011) Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery. Clin Proteomics. 13;8:13.

de Jong EP, van Riper SK, Koopmeiners JS, Carlis JV, Griffin TJ. (2011) Sample collection and handling considerations for peptidomic studies in whole saliva; implications for biomarker discovery. Clin Chim Acta. 412(23-24):2284-8.

Yerramsetty V, Mathias K, Bunzel M, Ismail B. (2011) Detection and structural characterization of thermally generated isoflavone malonylglucoside derivatives. J Agr Food Chem. 59(1):174-83.

2010 (39)

Yin de LT, Bernhardt P, Morley KL, Jiang Y, Cheeseman JD, Purpero V, Schrag JD, Kazlauskas RJ. (2010) Switching catalysis from hydrolysis to perhydrolysis in Pseudomonas fluorescens esterase. Biochemistry. 49(9):1931-42.

Vadnais ML, Roberts KP. (2010) Seminal plasma proteins inhibit in vitro- and cooling-induced capacitation in boar spermatozoa. Reprod Fertil Dev.22(6):893-900.

Wiederin JL, Donahoe RM, Anderson JR, Yu F, Fox HS, Gendelman HE, Ciborowski PS. (2010) Plasma proteomic analysis of simian immunodeficiency virus infection of rhesus macaques.  J Proteome Res. 9(9):4721-31.

Zykova TA, Zhu F, Vakorina TI, Zhang J, Higgins LA, Urusova DV, Bode AM, Dong Z. (2010) T-LAK cell-originated protein kinase (TOPK) phosphorylation of Prx1 at Ser-32 prevents UVB-induced apoptosis in RPMI7951 melanoma cells through the regulation of Prx1 peroxidase activity. J Biol Chem. 285(38):29138-46.

Makris TM, Chakrabarti M, Münck E, Lipscomb JD. (2010) A family of diiron monooxygenases catalyzing amino acid beta-hydroxylation in antibiotic biosynthesis. Proc Natl Acad Sci U S A. 107(35):15391-6.

Yang XY, Chen WP, Rendahl AK, Hegeman AD, Gray WM, Cohen JD. (2010) Measuring the turnover rates of Arabidopsis proteins using deuterium oxide: an auxin signaling case study. Plant J.63(4):680-95.

DeGraw AJ, Palsuledesai C, Ochocki JD, Dozier JK, Lenevich S, Rashidian M, Distefano MD. (2010) Evaluation of alkyne-modified isoprenoids as chemical reporters of protein prenylation. Chem Biol Drug Des. 76(6):460-71

El Ghazi I, Martin BL, Armitage IM. (2010) New proteins found interacting with brain metallothionein-3 are linked to secretion. Int J Alzheimers Dis 2011:208634.

Curtis JM, Grimsrud PA, Wright WS, Xu X, Foncea RE, Graham DW, Brestoff JR, Wiczer BM, Ilkayeva O, Cianflone K, Muoio DE, Arriaga EA, Bernlohr DA. (2010) Downregulation of Adipose Glutathione S-Transferase A4 Leads to Increased Protein Carbonylation, Oxidative Stress, and Mitochondrial Dysfunction. Diabetes. 59(5): 1132–1142.. doi: 10.2337/db09-1105

Zu T, Gibbens B, Doty NS, Gomes-Pereira M, Huguet A, Stone MD, Margolis J, Peterson, M, Markowski TW, Ingram MA, Nan Z, Forster C, Low WC, Schoser B, Somia NV, Clark HB, Schmechel S, Bitterman PB, Gourdon G, Swanson MS, Moseley M, Ranum LP. (2010)  Non-ATG-initiated translation directed by microsatellite expansions. PNAS 108(1):260-5.

Reilly SM, Krick T, Dass A. (2010) Surfactant-free Synthesis of Ultrasmall Gold Nanoclusters.  J Phys Chem. C 114 (2) 741–745

Posokhova E, Uversky V, and Martemyanov KA. (2010) Proteomic identification of Hsc70 as a mediator of RGS9-2 degradation by in vivo interactome analysis J Prot Res. 9(3):1510–1521

Bandhakavi S, Van Riper SK, Tawfik, PN, Stone MD, Haddad T, Rhodus N, Carlis J, Griffin TJ. (2010) Hexapeptide libraries for enhanced protein PTM identification and relative abundance profiling in whole human saliva.  J Proteome Res (3):1052-61

Yee JC, Jacob NM, Jayapal KP, Kok YJ, Philp R, Griffin TJ, Hu WS. (2010)  Global assessment of protein turnover in recombinant antibody producing myeloma cells. J Biotechnol 148 (4) 182-93.

Jayapal KP, Sui S, Philp RJ, Kok YJ, Yap MG, Griffin TJ, Hu WS. (2010)  Multitagging proteomic strategy to estimate protein turnover rates in dynamic systems. J Proteome Res 9 (5) 2087-97

Rudney JD, Xie H, Rhodus NL, Ondrey FG, Griffin TJ. (2010)  A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry.   Mol Oral Microbiol. 25 (1) 38-49

Bandhakavi S, Kim YM, Ro SH, Xie H, Onsongo G, Jun CB, Kim DH, Griffin TJ. (2010)  Quantitative nuclear proteomics identifies mTOR regulation of DNA damage response.Mol Cell Proteomics 9 (2) 403-14

Yoder A, Stone MD, Griffin TJ, Potter LR. (2010)  Mass spectrometric identification of phosphorylation sites in guanylyl cyclase A and B. Biochemistry 49(47) 10137-45

Onsongo G, Stone MD, Van Riper SK, Chilton J, Wu B, Higgins L, Lund TC, Carlis JV, Griffin TJ. (2010)  LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments. Proteomics 10(19) 3533-8.  

Kim YC, Udeshi ND, Balsbaugh JL, Shabanowitz J, Hunt DF, Olszewski NE. (2010) O-GlcNAcylation of the Plum pox virus capsid protein catalyzed by SECRET AGENT: characterization of O-GlcNAc sites by electron transfer dissociation mass spectrometry. Amino Acids. 40(3):869-76

Hovlid ML, Edelstein RL, Henry O, Ochocki J, DeGraw A, Lenevich S, Talbot T, Young VG, Hruza AW, Lopez-Gallego F, Labello NP, Strickland CL, Schmidt-Dannert C,  Distefano MD. (2010)  Synthesis, properties, and applications of diazotrifluropropanoyl-containing photoactive analogs of farnesyl diphosphate containing modified linkages for enhanced stability. Chem Biol Drug Des. 75(1):51-67.

Salinas K, Hemmer MJ, Serrano J, Higgins L, Anderson LB, Benninghoff AD, Williams DE, Walker C. (2010) Identification of estrogen-responsive vitelline envelope protein fragments from rainbow trout (Oncorhynchus mykiss) plasma using mass spectrometry.  Mol Reprod Dev. 77(11):963-70.

Stone MD, Odland RM, McGowan T, Onsongo G, Tang C, Rhodus NL, Jagtap P, Bandhakavi S, Griffin TJ. (2010) Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential. Clin Proteomics.6(3):75-82

Janagama HK, Senthilkumar TMA, Bannantine JP, Kugudas A, Jagtap P, Higgins L, Sreevatsan S. (2010) Iron-sparing Response of Mycobacterium avium subsp. paratuberculosis is strain dependent.  BMC Micro 10:268

Pozo-Bayon MA, Pimenta P, Pilch S, Masters JG, Martín-Alvarez PJ, Reineccius G. (2010) API-IT-MS for measuring aroma release from dentifrice products using a device to simulate tooth brushing. J Agric Food Chem. 2010 Apr 28;58(8):5034-41.

Kast D, Espinoza-Fonseca LM, Yi C, Thomas DD. (2010) Phosphorylation-induced structural changes in smooth muscle myosin regulatory light chain. Proc Natl Acad Sci U S A. 107(18):8207-12.

Cornea RL, Nitu FR, Samsó M, Thomas DD, Fruen BR. (2010) Mapping the ryanodine receptor

FK506-binding protein subunit using fluorescence resonance energy transfer. J Biol Chem.(25):19219-26.

Andersen JD, Jemmerson R, Geller MA, Miseme B, Boylan KLM, Harrington KM, Weivoda S, Witthuhn BA, Argenta P, Vogel RI and Skubitz APN. (2010) Leucine-rich alpha-2-glycoprotein-1 is Upregulated in Sera and Tumors of Ovarian Cancer Patients.  J Ovarian Res.3:21

de Jong EP, Xie H, Onsongo G, Stone MD, Chen XB, Kooren JA, Refsland EW, Griffin RJ, Ondrey FG, Wu B, Le CT, Rhodus NL, Carlis JV, Griffin TJ. (2010) Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions. PLoS One (6): 11148.

Liu B1, Liu Y, Lewis AK, Shen W. (2010) Modularly assembled porous cell-laden hydrogels. Biomaterials. 31(18):4918-25.

Serrano J, Higgins L, Witthuhn BA, Anderson LB, Markowski T, Holcombe GW, Kosian PA, Korte JJ, Tietge JE, Degitz SJ. (2010) In vivo assessment and potential diagnosis of xenobiotics that perturb the thyroid pathway: Proteomic analysis of Xenopus laevis brain tissue following exposure to model T4 inhibitors. Comp Biochem Physiol Part D Genomics Proteomics. 5(2):138-50.

Roe MR, McGowan TF, Thompson LV, Griffin TJ. (2010) Targeted 18O-labeling for improved proteomic analysis of carbonylated peptides by mass spectrometry. J Am Soc Mass Spectrom. 21(7):1190-203.

Anderson JD, Boylan KL, Xue FS, Anderson LB, Witthuhn BA, Markowski TW, Higgins L, and Skubitz AP. (2010) Identification of candidate biomarkers in ovarian cancer serum by depletion of highly abundant proteins and differential in-gel electrophoresis. Electrophoresis (4):599-610.

Boyce M, Malone ED, Anderson LB, Park S, Godden SM, Jenner F, and Trumbel TN. (2010), Evaluation of diffusion of triamcinolone acetonide from the distal interphalangeal joint into the navicular bursa in horses. Am J Vet Res. Feb;71(2):169-75.

Canales BK, Anderson L, Higgins L, Ensrud-Bowlin K, Roberts KP, Wu B, Kim IW, Monga M. (2010) Proteome of Human Calcium Kidney Stones. Urology. Urology. 6(4):1017

Zykova TA, Zhu F, Vakorina TI, Zhang J, Higgins L, Urusova DV, Bode AM, Dong Z. (2010) T-LAK lipidcell-originated protein kinase (TOPK)  phosphorylation of Prx1 at Ser32 prevents UVB-induced apoptosis in RPMI7951 melanoma cells through the regulation of Prx1 peroxidase activity. J Biol Chem. 285(38):29138-46

Boylan KL, Andersen JD, Anderson LB, Higgins L, Skubitz AP. (2010) Quantitative proteomic analysis by iTRAQ(R) for the identification of candidate biomarkers in ovarian cancer serum. Proteome Sci. 14;8:31

Gourley GR, Yang L, Higgins L, Riviere MA, David LL. (2010) Proteomic analysis of biopsied human colonic mucosa. J Pediatr Gastroenterol Nutr. 51(1):46-54.

Han j, Rutherford MS, Faaberg KS. (2010) Proteolytic Products of the Porcine Reproductive and Respiratory Syndrome Virus nsp2 Replicase Protein J Virol. 2010 Oct; 84(19): 10102–10112. doi: 10.1128/JVI.01208-10

2009 (15)

Liu L, Wagner CR, Hanna PE. (2009) Isoform-selective inactivation of human arylamine N-acetyltransferases by reactive metabolites of carcinogenic arylamines. Chem Res Toxicol. 22(12):1962-74.

Zhong S, Miller SP, Dykhuizen DE, Dean AM. (2009) Transcription, translation, and the evolution of specialists and generalists. Mol Biol Evol. 26(12):2661-78.

Chiu TL, Solberg J, Patil S, Geders TW, Zhang X, Rangarajan S, Francis R, Finzel BC, Walters MA, Hook DJ, Amin EA. (2009) Identification of novel non-hydroxamate anthrax toxin lethal factor inhibitors by topomeric searching, docking and scoring, and in vitro screening. J. Chem. Inf. Model. 49:2726–273

Seth M, Lamont EA, Janagama HK, Widdel A, Vulchanova L, Stabel JR, Waters WR, Palmer MV, Sreevatsan S. (2009) Biomarker discovery in subclinical mycobacterial infections of cattle. PLoS One.;4(5)

Fallon AM, Witthuhn BA. (2009) Proteasome activity in a naïve mosquito cell line infected with Wolbachia pipientis wAlbB.  In Vitro Cell Dev Biol Anim. 45(8):460-6.

Balog EM, Lockamy EL, Thomas DD, Ferrington DA. (2009) Site-specific methionine oxidation initiates calmodulin degradation by the 20S proteasome. Biochemistry 7;48(13):3005-16.

Bandhakavi S, Stone MD, Onsongo G, Van Riper SK, Griffin TJ. (2009) A dynamic range compression and three-dimensional peptide fractionation analysis platform expands proteome coverage and the diagnostic potential of whole saliva. J Proteome Res. 8 (12): 5590-600.

Wiczer BM, Bernlohr DA. (2009) A novel role for fatty acid transport protein 1 in the regulation of tricarboxylic acid cycle and mitochondrial function in 3T3-l1 adipocytes. J Lipid Res. 387(2):234-8.

Dharmaratne AC, Krick T, Dass A. (2009) Nanocluster size evolution studied by mass spectrometry in room temperature Au25(SR)18 synthesis. J Am Chem Soc. 30;131(38):13604-5.

Canales BK, Anderson L, Higgins L, Frethem C, Ressler A, Kim IW, Monga M. (2009) Proteomic analysis of a matrix stone: a case report. Urol Res. 37(6):323-9.

Harvey SB, Zhang Y, Wilson-Grady J, Monkkonen T, Nelsestuen GL, Kasthuri RS, Verneris MR, Lund TC, Ely EW, Bernard GR, Zeisler H, Homoncik M, Jilma B, Swan T, Kellogg TA. (2009) O-glycoside biomarker of apolipoprotein C3: responsiveness to obesity, bariatric surgery, and therapy with metformin, to chronic or severe liver disease and to mortality in severe sepsis and graft vs host disease. J Proteome Res. 8(2):603-12.

Riedl MS, Braun PD, Kitto KF, Roiko SA, Anderson LB, Honda CN, Fairbanks CA, and Vulchanova L. (2009), Proteomic analysis uncovers novel action of the neurosecretory protein VGF in nociceptve processing. J Neurosci. 29(42):13377-88.

Canales BK, Higgins L, Markowski T, Anderson L, Li QA, Monga M. (2009) Presence of five conditioning film proteins are highly associated with early stent encrustation. J Endourol. 23(9):1437-42.

Zhang Y, Oetting WS, Harvey SB, Stone MD, Monkkonen T, Matas AJ, Cosio FG, Nelsestuen GL. (2009)  Urinary Peptide patterns in native kidneys and kidney allografts. Transplantation.;87(12):1807-13

Zhang B, Zhang Z, von Keitz M, Valentas K. (2009) Treatment variable effects on supercritical gasification of high-diversity grassland perennials. Appl Biochem Biotechnol.154(1-3):59-66.

2008 (19)

Nelsestuen GL, Harvey SB, Zhang Y, Kasthuri RS, Sinaiko AR, Ely EW, Bernard GR, Homoncik M, Jilma B. (2008) Top-down proteomic analysis by MALDI-TOF profiling: Concentration-independent biomarkers. Proteomics Clin Appl.2(2):158-66.

Joshi P, Carrington EA, Wang L, Ketel CS, Miller EL, Jones RS, Simon JA. (2008) Dominant alleles identify SET domain residues required for histone methyltransferase of Polycomb repressive complex 2. J Biol Chem. 283 (41) :27757-66.

Decanini A, Karunadharma PR, Nordgaard CL, Feng X, Olsen TW, Ferrington DA. (2008) Human retinal pigment epithelium proteome changes in early diabetes. Diabetologia. 51(6):1051-61.

Liu L, Wagner CR, Hanna PE. (2008) Human arylamine N-acetyltransferase 1: in vitro and intracellular inactivation by nitrosoarene metabolites of toxic and carcinogenic arylamines. Chem Res Toxicol. 21(10):2005-16.

Fine JM, Sorensen PW. (2008) Isolation and biological activity of the multi-component sea lamprey migratory pheromone.  J Chem Ecol. 34(10):1259-67.

Agafonov RV, Nesmelov YE, Titus MA, Thomas DD. (2008) Muscle and nonmuscle myosins probed by a spin label at equivalent sites in the force-generating domain. Proc Natl Acad Sci USA.  105(36):13397-402.

Canales BK, Anderson L, Higgins L, Slaton J, Roberts KP, Liu N, Monga M. (2008) Comprehensive proteomic analysis of human calcium oxalate monohydrate kidney stone matrix. J Endourol. 22(6):1161-7.

Feng J, Xie H, Meany DL, Thompson LV, Arriaga EA, Griffin TJ. (2008) Quantitative proteomic profiling of muscle type-dependent and age-dependent protein carbonylation in rat skeletal muscle mitochondria. J Gerontol A Biol Sci Med Sci. 63(11):1137-52.

Chen CN, Ferrington DA, Thompson LV. (2008) Carbonic anhydrase III and four-and-a-half LIM protein 1 are preferentially oxidized with muscle unloading. J Appl Physiol. 105(5):1554-61.

Nordgaard CL, Karunadharma PP, Feng X, Olsen TW, Ferrington DA. (2008) Mitochondrial proteomics of the retinal pigment epithelium at progressive stages of age-related macular degeneration. Invest Ophthalmol Vis Sci. 49(7): 2848-55.

Prochniewicz E, Spakowicz D, Thomas DD. (2008) Changes in actin structural transitions associated with oxidative inhibition of muscle contraction.  Biochemistry.11;47(45):11811-7.

Pozo-Bayón MÁ, Schirlé-Keller J, and Reineccius GA. (2008) Determining Specific Food Volatiles Contributing to PTR-MS Ion Profiles Using GC-EI-MS J. Agric. Food Chem. 56 (13), 5278–5284

Gnanandarajah JS, Dvorak CM, Johnson CR, Murtaugh MP. (2008) Presence of free haptoglobin alpha 1S-subunit in acute porcine reproductive and respiratory syndrome virus infection. J Gen Virol.  89(11):2746-53.

Prochniewicz E, Lowe DA, Spakowicz DJ, Higgins L, O'Conor K, Thompson LV, Ferrington DA, Thomas DD. (2008) Functional, structural, and chemical changes in myosin associated with hydrogen peroxide treatment of skeletal muscle fibers.  Am J Physiol Cell Physiol. 294(2):C613-26.

Grimsrud PA, Xie H, Griffin TJ, Bernlohr DA. (2008) Oxidative stress and covalent modification of protein with bioactive aldehydes.J Biol Chem.283(32):21837-41.

Bandhakavi S, Xie H, O'Callaghan B, Sakurai H, Kim DH, Griffin TJ. (2008) Hsf1 activation inhibits rapamycin resistance and TOR signaling in yeast revealed by combined proteomic and genetic analysis. PLoS One. Feb 13;3(2):e1598.

Kassie F, Anderson LB, Higgins L, Pan Y, Matise I, Negia M, Upadhyaya P, Wang M, Hecht SS. (2008) Chemopreventive agents modulate the protein expression profile of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone plus benzo[a]pyrene-induced lung tumors in A/J mice. Carcinogenesis. 29(3):610-9.

Xie H, Onsongo G, Popko J, de Jong EP, Cao J, Carlis JV, Griffin RJ, Rhodus NL, Griffin TJ. (2008)  Proteomics analysis of cells in whole saliva from oral cancer patients via value-added three-dimensional peptide fractionation and tandem mass spectrometry. Mol Cell Proteomics (3):486-98.

Zhang B, von Keitz M, Valentas K. (2008) Maximizing the liquid fuel yield in a biorefining process Biotechnology and Bioengineering 101 (5)  903–912.

2007 (13)

Woo SY, Kim DH, Jun CB, Kim YM, Haar EV, Lee SI, Hegg JW, Bandhakavi S, Griffin TJ, Kim DH. (2007)  PRR5, a novel component of mTOR complex 2, regulates platelet-derived growth factor receptor beta expression and signaling J Biol Chem. 282(35):25604-12.

Roe MR, Xie H, Bandhakavi S, Griffin TJ. (2007) Proteomic mapping of 4-hydroxynonenal protein modification sites by solid-phase hydrazide chemistry and mass spectrometry. Anal Chem.79(10):3747-56.

Lund TC, Anderson LB, McCullar V, Higgins LA, Yun GH,  Grzywacz B, Verneris MR, and Miller JS. (2007) iTRAQ is a useful method to screen for membrane-bound proteins differentially expressed in human natural killer cell types. J Proteome Res.(2):644-53

Ethen CM, Reilly C, Feng X, Olsen TW, Ferrington DA. (2007) Age-related macular degeneration and retinal protein modification by 4-hydroxy-2-nonenal. Invest Ophthalmol Vis Sci. 48(8):3469-79.

Ogata Y, Charlesworth MC, Higgins L, Keegan BM, Vernino S, Muddiman DC. (2007) Differential protein expression in male and female human lumbar cerebrospinal fluid using iTRAQ reagents after abundant protein depletion. Proteomics 7(20):3726-34

Xie H, Bandhakavi S, Roe MR, Griffin TJ. (2007) Preparative Peptide isoelectric focusing as a tool for improving the identification of lysine-acetylated peptides from complex mixtures. J Proteome Res (5):2019-26.

Meany DL, Xie H, Thompson LV, Arriaga EA, Griffin TJ. (2007) Identification of carbonylated proteins from enriched rat skeletal muscle mitochondria using affinity chromatography stable isotope labeling and tandem mass spectrometry.  Proteomics (7):1150-63.

Duckworth BP, Zhang Z, Hosokawa A, Distefano MD. (2007) Selective labeling of proteins by using protein farnesyltransferase. Chembiochem. 2;8(1):98-105.

Vander Haar E, Lee SI, Bandhakavi S, Griffin TJ, Kim DH. (2007) Insulin signalling to mTOR mediated by the Akt/PKB substrate PRAS40. Nat Cell Biol (3):316-23.

Huq MD, Tsai NP, Lin YP, Higgins L, Wei LN. (2007) Vitamin B6 conjugation to nuclear corepressor RIP140 and its role in gene regulation. Nat Chem Biol (3):161-5.

Kassie F, Anderson LB, Scherber R, Yu N, Lahti D, Upadhyaya P, and Hecht SS. (2007) Indole-3-carbinol Inhibits 4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanone Plus Benzo[a]pyrene-Induced Lung Tumorigenesis in A/J Mice and Modulates Carcinogen-Induced Alterations in Protein Levels. Cancer Research, 67:6502-6511

Griffin TJ, Xie H, Bandhakavi S, Popko J, Mohan A, Carlis JV, Higgins L. (2007)  iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer. J Proteome Res (11):4200-9.

Grimsrud PA, Picklo MJ Sr, Griffin TJ, Bernlohr DA. (2007) Carbonylation of Adipose Proteins in Obesity and Insulin Resistance: Identification of Adipocyte Fatty Acid-binding Protein as a Cellular Target of 4-Hydroxynonenal. Mol Cell Proteomics (4):624-637.

2006 (11)

Zykova TA, Zhu F, Lu C, Higgins L, Tatsumi Y, Abe Y, Bode AM, Dong Z. (2006) Lymphokine-activated killer T-cell-originated protein kinase phosphorylation of histone H2AX prevents arsenite-induced apoptosis in RPMI7951 melanoma cells. Clin Cancer Res. 12(23):6884-93.

Ethen CM, Reilly C, Feng X, Olsen TW, Ferrington DA. (2006) The proteome of central and peripheral retina with progression of age-related macular degeneration. Invest Ophthalmol Vis Sci. 47(6):2280-90.

Roe MR, Griffin TJ. (2006) Gel-free mass spectrometry-based high throughput proteomics: tools for studying biological response of proteins and proteomes. Proteomics 6(17):4678-87.

Xie H, Griffin TJ. (2006) Trade-off between high sensitivity and increased potential for false positivepeptide sequence matches using a two-dimensional linear ion trap for tandem mass spectrometry-based proteomics. J Proteome Res. 5(4):1003-9.

Oetting WS, Rogers TB, Krick TP, Matas AJ, Ibrahim HN. (2006) Urinary beta2-microglobulin is associated with acute renal allograft rejection. Am J Kidney Dis. May;47(5):898-904.

Russeth KP, Higgins LA, and Andrews MT. (2006) Identification of Proteins from Non-model Organisms Using Mass Spectrometry: Application to a Hibernating Mammal. J Proteome Res. J Proteome Res. 5(4):829-39.

Xu J, Degraw AJ, Duckworth BP, Lenevich S, Tann CM, Jenson EC, Gruber SJ, Barany G, Distefano MD. (2006 )Synthesis and reactivity of 6,7-dihydrogeranylazides: reagents for primary azide incorporation into peptides and subsequent staudinger ligation. Chem Biol Drug Des.68(2):85-96.

Zhang Y, Wroblewski M, Hertz MI, Wendt CH, Cervenka TM, Nelsestuen GL. (2006) Analysis of chronic lung transplant rejection by MALDI-TOF profiles of bronchoalveolar lavage fluid. Proteomics (3):1001-10.

Smith JA, Blanchette RA, Burnes TA, Jacobs JJ, Higgins L, Witthuhn BA, David AJ, Gillman JH. (2006) Proteomic comparison of needles from blister rust-resistant and susceptible Pinus strobus seedlings reveals upregulation of putative disease resistance proteins. Mol Plant Microbe Interact (2):150-60.

Koehntop KD, Marimanikkuppam S, Ryle MJ, Hausinger RP, Que L Jr. (2006) Self-hydroxylation of taurine/alpha-ketoglutarate dioxygenase: evidence for more than one oxygen activation mechanism. J Biol Inorg Chem. 11(1):63-72.

Gonda K, Wudel J, Nelson D, Katoku-Kikyo N, Reed P, Tamada H, Kikyo N. (2006) Requirement of the protein B23 for nucleolar disassembly induced by the FRGY2a family proteins.  J Biol Chem. 24;281(12):8153-60.

2005 (13)

Xie H, Rhodus NL, Griffin RJ, Carlis JV, Griffin TJ. (2005) A catalogue of human saliva proteins identified by free flow electrophoresis-based peptide separation and tandem mass spectrometry. Mol Cell Proteomics. 4(11):1826-30.

Xie H, Bandhakavi S, Griffin TJ. (2005) Evaluating preparative isoelectric focusing of complex peptide mixtures for tandem mass spectrometry-based proteomics: a case study in profiling chromatin-enriched subcellular fractions in Saccharomyces cerevisiae. Anal Chem. 77(10):3198-207.

Huq MD, Wei LN. (2005) Post-translational Modification of Nuclear Co-repressor Receptor-interacting Protein 140 by Acetylation. Mol Cell Proteomics 4(7):975-83.

 Lahti DW, Hoekman JD, Tokheim AM, Martin BL, Armitage IM. (2005) Identification of mouse brain proteins associated with isoform 3 of metallothionein. Protein Sci 14(5):1151-7.

Huq MD, Khan SA, Park SW, Wei LN. (2005) Mapping of phosphorylation sites of nuclear co-repressor receptor interacting protein 140 by liquid chromatography-tandem mass spectroscopy. Proteomics 5(8):2157-66.

Marko MD, Newman RM, Gleason FK. (2005) Chemically mediated host-plant selection by the milfoil weevil: a freshwater insect-plant interaction. J Chem Ecol.  (12):2857-76.anderson

An S, Musier-Forsyth K. (2005) Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase.YbaK.tRNA ternary complex. J Biol Chem. 280(41):34465-72

Nelsestuen GL, Martinez MB, Hertz MI, Savik K, Wendt CH. (2005) Proteomic identification of human neutrophil alpha-defensins in chronic lung allograft rejection. Proteomics (6):1705-13.

Gronwald JW, Plaisance KL, Marimanikkuppam S, and Ostrowski BG. (2005) Tagetitoxin purification and partial characterization.  Phys Mol Plant Path 67: 23-32.

Ilic N, Habus I, Barkawi LS, Park S, Cohen JD, Magnus V. (2005) Aminoethyl-substituted indole-3-acetic acids for the preparation of tagged and carrier-linked auxin. Bioorganic & Med Chem 13 3229-3240.

Stone MD, Harvey SB, Martinez MB, Bach RR, Nelsestuen GL. (2005) Large enhancement of functional activity of active site-inhibited factor VIIa due to protein dimerization: insights into mechanism of assembly/disassembly from tissue factor. Biochemistry 26 44(16):6321-6325.

Streitz JM Jr, Madden MT, Marimanikkuppam SS, Krick TP, Salo WL, Aufderheide AC. (2005) Analysis of protein expression patterns in Barrett's esophagus using MALDI mass spectrometry, in search of malignancy biomarkers.  Dis Esophagus (3):170-6.

Nelsestuen GL, Zhang Y, Martinez MB, Key NS, Jilma B, Verneris M, Sinaiko A, and  Kasthuri RS. (2005)  Plasma protein profiling: unique and stable features of individuals. Proteomics (15):4012-24.

2004 (7)

Anderson LB, Ouellette AJ, Eaton-Rye J, Maderia  M, MacCoss MJ, Yates JR 3rd, Barry BA. (2004) Evidence for a post-translational modification, aspartyl aldehyde, in a photosynthetic membrane protein. J Am Chem Soc 126(27):8399-40.

Wang H, Gregory M. Vath GM, Kara J. Gleason KJ, Patrick E. Hanna PE, and Wagner CR. (2004) Probing the Mechanism of Hamster Arylamine N-Acetyltransferase 2 Acetylation by Active Site Modification, Site-Directed Mutagenesis, and Pre-Steady State and Steady State Kinetic Studies. Biochem 43: 8234-8246.

Pearson AR, Mora-Rey T,  Graichen ME, Wang Y, Jones LH, Marimanikkuppam SS, Agger SA, Grimsrud PA, Davidson VL, and Wilmot CM. (2004) Further Insights into Quinone Cofactor Biogenesis:Probing the role of mauG in methylamine dehydrogenase TTQ formation. Biochemistry 43(18) 5494-5502.

Fullmer JM, Riedl MS, Higgins L, Elde R. (2004) Identification of some lectin IB4 binding proteins in rat dorsal root ganglia. Neuroreport 15(11):1705-9.

Guo Z, Wagner CR, and Hanna PE. (2004) Mass Spectrometric Investigation of the Mechanism of Inactivation of Hamster Arylamine N Acetyltransferase 1 by N-Hydroxy-2-Acetylaminofluorene. Chem Res Toxicol 17: 275-286

Buffo, RA, Rapp, JA. Krick, T, and Reineccius, GA. (2004) Persistence of aroma compounds in human breath after consuming an aqueous model aroma mixture. Food Chem 89:103-108

Wang H, Guo Z, Vath GM, Wagner CR and Hanna PE. (2004)Chemical Modification of Hamster Arylamine N-Acetyltransferase 2 with Isozyme-Selective and Nonselective N-Arylbromoacetamido Reagents.  Protein J 23: 153-166.ost

2003 (7)

Balog EM, Norton LE, Bloomquist RA, Cornea RL, Black DJ, Louis CF, Thomas DD, Fruen BR. (2003) Calmodulin oxidation and methionine to glutamine substitutions reveal methionine residues critical for functional interaction with ryanodine receptor-1.  J Biol Chem. 278(18):15615-21.

Harvey SB, Stone MD, Martinez MB, Nelsestuen GL. (2003)  Mutagenesis of the gamma-carboxyglutamic acid domain of human factor VII to generate maximum enhancement of the membrane contact site. J Biol Chem. 278(10):8363-9.

Guo Z, Vath GM, Wagner CR and Hanna PE. (2003) Arylamine N-Acetyltransferases: Covalent Modification and Inactivation of Hamster NAT1 by Bromoacetamido Derivatives of Aniline and 2-Aminofluorene. J Prot Chem 22: 631-642.

Pearson AR, Jones LH, Higgins L, Ashcroft AE, Wilmot CM, Davidson VL. (2003) Understanding quinone cofactor biogenesis in methylamine dehydrogenase through novel cofactor generation. Biochemistry 42(11):3224-30.

Hernandez VP, Higgins L, Fallon AM. (2003) Characterization and cDNA cloning of an immune-induced lysozyme from cultured Aedes albopictus mosquito cells. Dev Comp Immunol. 27(1):11-20.

Kapphahn RJ, Ethen CM, Peters EA, Higgins L, Ferrington DA. (2003) Modified alpha A crystallin in the retina: altered expression and truncation with aging. Biochemistry 42(51):15310-25.

Hernandez VP, Higgins L, Schwientek MS,  Fallon AM. (2003) The histone-like C-terminal extension in ribosomal protein S6 in Aedes and Anopheles mosquitoes is encoded within the distal portion of exon 3. Insect Biochem Mol Biol 33(9):901-10.

2002 (1)

Anderson LB, Maderia M, Ouellette AJA, Putnam-Evans C, Higgins L, Krick T, MacCoss MJ, Lim H, Yates JRIII, Barry BA. (2002) Post-translational modifications in the CP43 Subunit of the Photosystem II. PNAS USA 99:14676-14681

2001 (3)

Martinez MB, Flickinger M, Higgins L, Krick T, Nelsestuen GL. (2001) Reduced outer membrane permeability of Escherichia coli O157:H7: suggested role of modified outer membrane porins and theoretical function in resistance to antimicrobial agents. Biochemistry. 40(40):11965-74.

Peterson C, Simon M, Hodges J, Mertens P, Higgins L, Egelman E, Anderson D. (2001) Composition and mass of the bacteriophage phi29 prohead and virion. J Struct Biol. 135(1):18-25.

Witthuhn BA, Bernlohr DA. (2001) Upregulation of bone morphogenetic protein GDF-3/Vgr-2 expression in adipose tissue of FABP4/aP2 null mice. Cytokine. 7;14(3):129-35.