Introduction Galaxy Australia: Differential Gene Expression from Bacterial RNA-seq Data

23 October, 2018

This schedule: https://tinyurl.com/galaxyworkshop3

Discussion Board: https://tinyurl.com/galaxyworkshop3-discussion

Time (AEDT)

Activity

People

Before 2pm

Arrive, connect to wi-fi etc

Participants

2.00

Welcome and speaker introductions

EMBL-ABR

2.10

Workshop outline, logistics, objectives.

Introduction to Galaxy Australia (brief)

Anna Syme

2.20

Log in to Galaxy Australia

Participants

2.30

Introduction to RNA-seq: slides

Anna Syme

2.50

Tutorial: Bacterial RNA-seq (up to the JBrowse section)

Participants

3.10

Question time: Anna answers questions written in the Discussion Board (while JBrowse runs)

Anna Syme

3.20

Continue with tutorial (Count matrix, Voom, Degust)

Participants

3.50

Break - 20 minutes, or finish previous exercises if required.

4.10

Speaker returns and requests questions from facilitators, runs through answers

Speakers & facilitators

4.20

Tutorial: Workflow for Bacterial RNA-seq

Participants

4.30

Summary of today's workshop 

Anna Syme

4.40

Wrap up, Feedback survey:

https://www.surveymonkey.com/r/GalaxyAust-RNA-seq

EMBL-ABR