Genomics Workshop: Intersect, December 2017

This page: https://tinyurl.com/intersect-omics-dec-2017

Instructors:  Simon Gladman, Anna Syme

Program: Friday 1st December, 1.30-4.30

Time

Topic

Workshop materials

Other resources

1.30

Overview

Slides (Anna)

Introduction to Galaxy

Slides (Simon)

Galaxy Tutorial

Tutorial: Galaxy

Galaxy-Mel or Galaxy-Qld

on Chrome, Firefox, Safari

Break

2.30

Genome Assembly

Slides: Genome Assembly (Simon)

Tutorial: Assembly

Spades

Genome Annotation

Slides: Annotation (Anna)

Tutorial: Annotation

Prokka

Break

3.30

Variant Calling

Slides: Variant calling (Simon)

Tutorial: Variant calling

Snippy

Summary

Slides (Anna)

Omics FAQ

Please complete the survey at the end of the Omics FAQ

Sydney Informatics Hub Survey

Thank you

Melbourne Bioinformatics

EMBL-ABR