Facilitator Training: Event Schedule, 26-27 July 2018

Location: Melbourne Bioinformatics, 187 Grattan Street, Carlton, Victoria, Australia.

Link to this schedule: https://tinyurl.com/galaxy-july-2018

Day 1: Thursday 26 July

Time

Topic

Content

10:00

The Facilitator Training workshop

Anna Syme

Link to slides

10:10

The Galaxy Australia project

Gareth Price

Link to slides

10:30

Coffee Break

10:50

Introduction to Galaxy Australia

Anna Syme

Link to slides

11:00

Galaxy Australia: Get Started

Anna Syme

Link to slides

Tutorial 1: Get Started

Tutorial 2: Learn Key Tasks

11:50

Galaxy: Behind the Scenes

Simon Gladman

Link to slides

12:20

Building training for Galaxy Australia

Anna Syme

Link to slides

12:30

Lunch

13:30

Galaxy Workflows

Anna Syme

Link to slides

14:00

Galaxy Histories

Igor Makunin

Link to slides

14:30

Genome assembly and annotation

Torsten Seemann

Anna Syme

Link to slides

Tutorial 1: Assembly

Tutorial 2: Annotation

15:30

Break

15:50

Genome assembly and annotation continued

17:00

End day 1

Optional additional tutorials:

Multi-locus sequence typing

Abricate: Find resistance genes

Create a Galaxy Workflow

18:30

Dinner

Dinner details

Day 2: Friday 27 July

Time

Topic

Content

9:00

Variant Calling

Igor Makunin

Link to slides

Tutorial

10:30

Coffee Break

10:50

RNA-seq

Anna Syme

Jessica Chung

Link to slides

Tutorial

12:00

Lunch

13:00

Interactive Environments Demonstration

Simon Gladman

Link to slides

13:30

Metagenomics

Anna Syme

Dieter Bulach

Slides: Galaxy Au Metagenomics

Link to slides: Metagenomics

Tutorial

15:30

Break

Please download zoom:https://zoom.us/

Go to Resources: Download Zoom Client

15:40

Node workshops

Jeff Christiansen

Link to information

Zoom meeting link: https://aarnet.zoom.us/j/5478703366  

Etherpad link:

https://etherpad.wikimedia.org/p/Galaxy_Facilitator_Training 

Dates:

Wed Aug 22 1-4pm AEST – Genome assembly

Wed Sep 12 1-4pm AEST – Variant calling

 Tue Oct 23 2-5pm AEDT - RNA-seq

 Wed Nov 14 1-4pm AEDT - Metagenomics

16:00

Facilitator Training event summary

Anna Syme

Link to slides

Optional additional tutorials:

Variant calling - human

Sample identification

16:30

End day 2

https://galaxy-au-training.github.io/tutorials/