Genomics Workshop: FVAS, November 2017

Home: http://tinyurl.com/fvas-genomics-nov-2017

Where:  The University of Melbourne, Faculty of Veterinary and Agricultural Sciences, Building 400 (corner Park Drive and Flemington Road, Parkville), Computer Lab (PAR-VPS-311)

Instructors:  Simon Gladman, Anna Syme, Torsten Seemann

FVAS: Neil Young, Pasi Korhonen, Mauricio Coppo, Nadeeka Wawegama, Clare Anstead, Christina Marth

Program: Wednesday 29th November 2017  9.30am - 4.30pm

Time

Topic

Workshop materials

Other resources

9.30

Outline for today

Slides

9.45

Introduction to Galaxy and the GVL

Slides

10.00

Galaxy Tutorial

Tutorial

Use the Galaxy-Mel server

10.30

Break

11.00

Genome Assembly

Slides + Tutorial

Spades

12.30

Lunch

1.30

Annotation

Slides + Tutorial 

Prokka

2.20

Useful genomics tools (Information and demonstrations)

Slides

Software:

Bandage, Mauve, Roary, Phandango, Canu

2.40

Getting data to/from repositories

Slides 

NCBI submission portal

ENA submission portal

3.00

Break

3.30

Variant calling

Slides + Tutorial

Snippy

4.20

Summary

Slides

4.30

Feedback forms

Melbourne Bioinformatics

EMBL-ABR