Integrative Bioinformatics 2018 #IBUK2018
Rothamsted Research, Harpenden, AL5 2JQ, UK
PROGRAMME
Wednesday June 13 | ||
9:30 | Registration | |
Room 104 | Room 102 & 103 | |
10:00 11:30 coffee | Workshop 1 - FAIR data management for plant genomics & phenomics
| Workshop 3 - Protein Structure Prediction, Molecular Visualisation and Variant Analysis
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13:00 | Lunch break | |
14:00 15:30 coffee | Workshop 2 - Connecting the dots in life science data
| Workshop 4 - COPO and Grassroots – a portal for plant scientists to describe, store and retrieve data more easily
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18:00 | Pub social in Harpenden Arms | |
Thursday June 14 | ||
9:00 | Registration | |
9:30 | Welcome
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Session 1: Bioinformatics resources for gene discovery
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9:45 | Keynote address: CATH Functional Families to Predict Protein Functions and Track Evolution
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10:30 | InterMine past, present and future
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11:00 | Coffee break (30 minutes) | |
11:30 | Phyre and PhyreRisk – Integrating genetic variant data with experimental and predicted protein structures and their complexes
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11:50 | KnetMiner - exploratory data mining and gene discovery using genome-scale knowledge networks
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12:10 | Modeling and simulating aerobic carbon metabolism of green microalga using Petri-nets and VANESA
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12:30 | Beyond the one-way ANOVA for 'omics data
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12:45 | Pathogen-Host Interactions database
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12:55 | How can you show off your data?
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13:05 | Lunch break (1.5 hours) Including opportunity for poster presentation and software demos | |
Session 2: Multi-omics and systems biology
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14:30 | Keynote address: Computational methods for analyzing large collections of single cell RNA-seq datasets
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15:15 | Multi-layered networks – an integrative and system-specific approach to understand complex diseases
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15:45 | Developing approaches for integrative view on regulatory mechanisms involved in molecular interspecies communications
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16:00 | Coffee break (30 min) | |
16:30 | Understanding the organization principles of Rho GTPase Signaling through a systems analysis of RhoGEF/RhoGAP regulators
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17:00 | Multi-omic dissection and prediction of complex traits in plants
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17:20 | BioModelKit - An Integrative Framework for Multi-Scale Biomodel-Engineering
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17:40 | Applying computer vision and machine learning to address the pressing challenges of modern plant phenotyping
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18:00 | Visit a modern field phenotyping platform and world’s longest running experiment | |
19:00 | Reception and dinner party at Rothamsted Manor | |
22:00 | Taxis depart to Hotels | |
Friday June 15 | ||
Session 3: From FAIR data to knowledge graphs to AI
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9:30 | Keynote address: From Text to Data to the World – The Future of Knowledge Graphs
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10:15 | Deep Learning and Artificial Intelligence platforms, the future is amazing!
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10:45 | Towards FAIRer Biological Knowledge Networks using a hybrid Linked Data and Graph Database approach
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11:05 | Coffee break (25 minutes) | |
11:30 | Stepping the stones and exploring the paths, lessons from Open PHACTS and WikiPathways
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12:00 | Semantics as a service
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12:20 | FAIR URIs for Data Integration Platforms
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12:35 | Machine learning-driven analysis of biological networks for predictive modelling of drug toxicity
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12:50 | A dive into automating food quality assessment, using cloud computing and machine learning
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13:00 | Lunch break (1 hour) | |
Session 4: Better software, better research
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14:00 | Keynote address: Better software, better services, better research: SSI, ELIXIR and you
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14:45 | Galaxy and beyond
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15:15 | Immersive Analytics in Integrative Bioinformatics
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15:30 | A User Experience Toolkit for Life Sciences
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16:00 | Close and Depart | |
Workshop 1 | ||
FAIR Data Management for Plant Genomics & Phenomics: Standards, Tools and Infrastructures | ||
10:00 | Standards for distributed plant data integration: challenges and solutions
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10:20 | Publish and share primary research data: use case plant phenomics data
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10:40 | e!DAL - a Comprehensive Infrastructure to FAIRly Store & Publish Research Data
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11:30 | Coffee break (15 minutes) | |
11:45 | WheatIS and ELIXIR plant data discovery
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13:00 | Lunch break (one hour) | |
Workshop 2 | ||
Connecting the dots in Life Sciences: data integration, knowledge graphs and the KnetMiner use case | ||
14:00 | Setting the scene: introduction to data integration and KnetMiner
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14:30 | Behind the scenes of KnetMiner: towards standardised and interoperable knowledge graphs
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15:30 | Coffee break (15 minutes) | |
15:45 | Neo4j graph database - Introduction to Neo4j, Cypher and latest developments
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16:30 | Genestack - Deploying private KnetMiner Servers in the cloud
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17:00 | Open Discussion | |
18:00 | Pub social in Harpenden Arms | |
Workshop 3 | ||
Protein Structure Prediction, Molecular Visualisation and Variant Analysis using Phyre, EzMol and PhyreRisk | ||
10:00 | Phyre presentations
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11:30 | Coffee break (15 minutes) | |
11:45 | EzMol presentations
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12:00 | PhyreRisk presentations
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12:15 | Attendees explore tools | |
13:00 | Lunch break (one hour) | |