EBAME 8 Schedule. All lectures in IUEM Amphi D, except Seminars in amphi A
All Course Material can be found here: https://doi.org/10.5281/zenodo.10211116
Week 1 | Saturday 21 | Sunday 22 | Monday 23 | Tuesday 24 | Wednesday 25 | Thursday 26 | Friday 27 |
8:30 - 9:00 | NEMEA - EBAME Shuttle | NEMEA - EBAME Shuttle | NEMEA - EBAME Shuttle | NEMEA - EBAME Shuttle | NEMEA - EBAME Shuttle | NEMEA - EBAME Shuttle | NEMEA - EBAME Shuttle |
9:00 - 12:00 | Shuttle to Grocery store (10:00 to 12:00) | Delmont The interactive interface of anvi'o | Delmont genome- resolved metagenomics: concept and science | EBAME SEMINAR 1 (Amphi A) Delmont (0:45) Mirusviruses link herpesviruses to giant viruses Adriaensen (0:45) Viral metagenomics Pelletier (1:30) Climbing the omics complexity ladder - Exploration of marine protists with Tara Oceans | Adriaenssens Viral metagenomics Lecture | Veseli Microbial metabolism with Anvi’o Lecture and lab | |
12:00 - 13:30 | Lunch | Lunch | Lunch | Lunch | Lunch | ||
13:30-14:00 | Flash talks | Flash talks | Flash talks | Flash talks | Flash talks | ||
14:00 - 14:30 | coffee | coffee | coffee | coffee | coffee | ||
14:30-18:00 | 17:00 - 19:00 NEMEA Check in (Late arrival OK) | Delmont Pangenomics | Delmont genome- resolved metagenomics Lab | Delmont Phylogenomics | Telatin / Pye Viral metagenomics Lab | Trigodet Upscaling your ‘omic analysis with publicly available genomes and metagenomes | |
18:00-18:30 | 19:00 Ice Breaker reception at NEMEA | EBAME-NEMEA Shuttle | EBAME-NEMEA Shuttle | EBAME-NEMEA Shuttle | EBAME-NEMEA Shuttle | EBAME-NEMEA Shuttle |
Week 2 | Saturday 28 | Sun 29 | Monday 30 | Tuesday 31 | Wednesday 1 | Thursday 2 | Friday 3 | Saturday 4 |
8:30 - 9:00 | NEMEA - EBAME Shuttle | NEMEA - EBAME Shuttle | NEMEA - EBAME Shuttle | NEMEA - EBAME Shuttle | NEMEA - EBAME Shuttle | NEMEA - EBAME Shuttle | NEMEA - EBAME Shuttle | |
9:00 - 12:00 | Frioux discrete metabolic network reconstruction: from genome to community | day off | Raguideau metagenomics binning and snakemake with METAHOOD Manual versus automatic metagenomic workflow. lab | EBAME SEMINAR 2 (Amphi A) Quince (0:30) Microbiome response to antibiotics across multiple scales Frioux (0:30) Addressing the continuum of ecotypes in the gut microbiome with enterosignaturesFernandez-Guerra (0:30) Microbiome Time Travellers: preserving the past, Shaping the future. Sikora (0:30) Pathogens in space and time - Lessons from high-throughput screening for ancient pathogen DNA Schroeder (0:30) Parasites lost: Parasite detection in ancient and modern metagenomic datasets | Quince lab Long read sequencing, assembly and workflow lecture and lab | Quince Strain deconvolution STRONG | 9:00: Housing check out | |
12:00 - 13:30 | Bring your lunch! (restaurant closed) | Lunch | Lunch | Bring your lunch! (restaurant closed) | Lunch | Lunch | ||
13:30-14:00 | Flash talks | Flash talks | Flash talks | Flash talks | Flash talks | |||
14:00:14:30 | coffee | coffee | coffee | coffee | coffee | coffee | ||
14:30-18:00 | Eveillard quantitative metabolic network reconstruction: from genomes to Earth system models | day off | Delmont / Trouche Microdiversity in metagenomes lecture lab | Fernandez / Sikora / Schroeder Paleogenomics lab | Benoit Metagenomics assembly Lecture and lab | Marbouty Contact genomics Lecture Marbouty deconvolution of microbial communities using 3C/Hi-C data lab | ||
18:00-18:30 | EBAME-NEMEA Shuttle | EBAME-NEMEA Shuttle | EBAME-NEMEA Shuttle | EBAME-NEMEA Shuttle | EBAME-NEMEA Shuttle | EBAME-NEMEA Shuttle | EBAME-NEMEA Shuttle |