Time | Activity | Speaker |
9:00 - 10:15 a.m.
| Introduction - Data Explosion and Clouds
(Chair: Bob Cottingham)
| - Folker Meyer, Welcome and Workshop Charge (10 minutes)
- Dawn Field, Building the M5 Platform: A Next-Generation MetaInfrastructure for the Metagenomics Community
- Eugene Kolker, M5 and Multi OMICS
|
10:15 - 10:30 a.m. | Coffee Break | Provided |
| 10:30 - 12:00 p.m. | Application Talks
(Chair: Folker Meyer, 20 minutes each) | - David Haussler, Genomes in the Clouds: The UCSC Genomics Browsers and Distributed Bio-Computation
- Simon Twigger, ViPDAC, A Stand-Alone Proteomics Analysis Suite in the Cloud
- Ananth Kalyanaraman, Using Clouds for Data-Intensive Computations in Proteomics
- Michael Schatz, Commodity Computing in Genomics Research
|
12:00 - 12:30 p.m. | Lunch Break | Lunch Provided |
12:30 - 2:00 p.m. | Round Table / Panel Discussion
(Chair: Susan Gregurick)
| - Susan Gregurick, Bob Cottingham, Welcome and Knowledgebase (KBase) Introduction (10 minutes)
- Kathy Yelick, Pete Beckman, The Magellan Clouds (10 minutes)
- Future Directions for Cloud Computing in Systems and Computational Biology
- Owen White (University of Maryland)
- Pete Beckman (Argonne National Laboratory)
- Kathy Yelick (Lawrence Berkeley National Laboratory)
- Dawn Field (Oxford Centre for Ecology and Hydrology)
- David Haussler (University of California, Santa Cruz)
- Jeff Grethe (University of California, San Diego)
- Folker Meyer (Argonne National Laboratory)
- Victor Markowitz (Joint Genomics Institute)
- Eugene Kolker (Seattle Children's Hospital)
- Bob Cottingham (Oak Ridge National Laboratory)
|
2:00 - 3:00 p.m. | Technical Talks
(Chair: Owen White, 15 minutes each) | - Sam Angiuoli, CloVR: A Virtual Appliance for Automated Analysis of Sequence Data
- Narayan Desai, AWE: A Novel Approach to Cloud-Scale Bioinformatics
- Lavanya Ramakrishnan, A Performance Comparision of Massively Parallel Sequence Matching Computations on Cloud Computing Platforms and HPC Clusters Using Hadoop
- Kate Keahey, Cloud Computing for Science
|
3:00 - 3:30 p.m. | Coffee Break | Provided |
| 3:30 - 4:30 p.m. | Technical Talks
(Chair: Victor Markowitz , 15 minutes each) | - Bob Grossman, Cloud-Based Services For Large Scale Analysis of Sequence and Expression Data: Lessons From Cistrack
- Judy Qiu, Using MapReduce Technologies in Bioinformatics and Medical Informatics
- Thomas Brettin, Architectures for the Next Generation of Systems Biology Informatics
- Owen White, An Approach to Generate Consensus Annotation
|
4:30 - 5:30 p.m. | Final Discussion / Round Up / Summary | - Deepak Singh, The Role of Cloud Computing in Big Biology
|
5:30 p.m. | Adjourn |
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