2007
  1. Del Rio, A., Dutta, K., Chavez, J., Ubarretxena-Belandia, I. & Ghose, R. Solution structure and dynamics of the N-terminal cytosolic domain of rhomboid intramembrane protease from Pseudomonas aeruginosa: insights into a functional role in intramembrane proteolysis. J Mol Biol 365, 109-22 (2007).
  2. Ellison, G. M., Torella, D., Karakikes, I., Purushothaman, S., Curcio, A., Gasparri, C., Indolfi, C., Cable, N. T., Goldspink, D. F. & Nadal-Ginard, B. Acute beta-adrenergic overload produces myocyte damage through calcium leakage from the ryanodine receptor 2 but spares cardiac stem cells. J Biol Chem 282, 11397-409 (2007).
  3. Eichenbaum, K.D., Mezei, M. & Eichenbaum, J. W. Digital Contact Tonometry as an Aid in Contact Tonometry and Glaucoma Treatment. Annals of Ophthalmology 39, 41-49 (2007).
  4. Escalante, C. R., Nistal-Villan, E., Shen, L., Garcia-Sastre, A. & Aggarwal, A. K. Structure of IRF-3 bound to the PRDIII-I regulatory element of the human interferon-beta enhancer. Mol Cell 26, 703-16 (2007).
  5. Ivanov, A.V., Peng, H., Yuchenko, V., Yap, K.L., Negorev, D.G., Schultz, D.C., Psulkowsky, E., Fredericks, W.J., White, D.E., Maul, G.G., Sadofsky, M.J., Zhou, M.-M., & Rauscher, F.J. PHD Domain-Mediated E3 Ligase Activity Directs Intramolecular Sumoylation of an Adjacent Bromodomain which is Required for Gene Silencing. Molecular Cell 28, 823-837 (2007).
  6. Jedlovszky, P., Partai, L. & Mezei, M. The Structure of the Zwitterionic Headgroups in a DMPC Bilayer as Seen from Monte Carlo Simulation: Comparison with ionic solutions. J. Molec. Liquids. 131-132, 225-234 (2007). 
  7. Kanellis, P., Gagliardi, M., Banath, J. P., Szilard, R. K., Nakada, S., Galicia, S., Sweeney, F. D., Cabelof, D. C., Olive, P. L. & Durocher, D. A screen for suppressors of gross chromosomal rearrangements identifies a conserved role for PLP in preventing DNA lesions. PLoS Genet 3, e134 (2007).
  8. Kentsis, A., Gindin, T., Mezei, M. & Osman, R. Calculation of the free energy and cooperativity of protein folding. PLoS ONE 2, e446 (2007).
  9. Logothetis, D. E., Jin, T., Lupyan, D. & Rosenhouse-Dantsker, A. Phosphoinositide-mediated gating of inwardly rectifying K(+) channels. Pflugers Arch 455, 83-95 (2007).
  10. Logothetis, D. E., Lupyan, D. & Rosenhouse-Dantsker, A. Diverse Kir modulators act in close proximity to residues implicated in phosphoinositide binding. J Physiol 582, 953-65 (2007).
  11. Logothetis, D. E. & Nilius, B. Dynamic changes in phosphoinositide levels control ion channel activity. Pflugers Arch 455, 1-3 (2007).
  12. Lone, S., Townson, S. A., Uljon, S. N., Johnson, R. E., Brahma, A., Nair, D. T., Prakash, S., Prakash, L. & Aggarwal, A. K. Human DNA polymerase kappa encircles DNA: implications for mismatch extension and lesion bypass. Mol Cell 25, 601-14 (2007).
  13. Mezei, M. & Jedlovszky, P. Statistical thermodynamics through computer simulation to characterize phospholipid interactions in membranes. Methods Mol Biol 400, 127-44 (2007).
  14. Mezei, M. & Zhou, M. M. Pspace: a program that assesses protein space. Source Code Biol Med 2, 6 (2007).
  15. M. Mezei. Results from an Early Polarization Model Based on Maxwell's Invariant Multipole Form (invited contribution), J. Chem. Theory and Comp., in print (2007).  
  16. Michailidis, I. E., Helton, T. D., Petrou, V. I., Mirshahi, T., Ehlers, M. D. & Logothetis, D. E. Phosphatidylinositol-4,5-bisphosphate regulates NMDA receptor activity through alpha-actinin. J Neurosci 27, 5523-32 (2007).
  17. Mujtaba, S., Zeng, L. & Zhou, M. M. Structure and acetyl-lysine recognition of the bromodomain. Oncogene 26, 5521-7 (2007).
  18. Pan, C., Mezei, M., Mujtaba, S., Muller, M., Zeng, L., Li, J., Wang, Z., & Zhou M. M., Structure-guided Optimization of Small Molecules Inhibiting Human Immunodeficiency Virus 1 Tat Association with the Human Coactivator p300/CREB Binding Protein-Associated Factor, J. Med.Chem 50, 2285-2288 (2007).     
  19. Partay, L. B., Jedlovszky , P., Hoang, P. N. M., Picaud, S. & Mezei, M. Free Energy Profile of Small Solute Molecules at the Free Surfaces of Water and Ice, as Determined by Cavity Insertion Widom Calculations. J. Phys. Chem. C. 111, 9407-9416 (2007).   
  20. Pin, J. P., Neubig, R., Bouvier, M., Devi, L., Filizola, M., Javitch, J. A., Lohse, M. J., Milligan, G., Palczewski, K., Parmentier, M. & Spedding, M. International Union of Basic and Clinical Pharmacology. LXVII. Recommendations for the recognition and nomenclature of G protein-coupled receptor heteromultimers. Pharmacol Rev 59, 5-13 (2007).
  21. Rodriguez, Y., Mezei, M. & Osman, R. Association free energy of dipalmitoylphosphatidylserines in a mixed dipalmitoylphosphatidylcholine membrane. Biophys J 92, 3071-80 (2007).
  22. Rosenhouse-Dantsker, A. & Logothetis, D. E. Molecular characteristics of phosphoinositide binding. Pflugers Arch 455, 45-53 (2007).
  23. Rusinova, R., Mirshahi, T. & Logothetis, D. E. Specificity of Gbetagamma signaling to Kir3 channels depends on the helical domain of pertussis toxin-sensitive Galpha subunits. J Biol Chem 282, 34019-30 (2007).
  24. Sampath, S., Marazzi, I., Yap, K.L., Sampath, S., Krutchinskly, A., Mecklenbrauker, I., Vlale, A., Rudensky, E., Zhou, M.-M., Chait, B. & Tarakhovsky, A. Methylation of a Histone Mimic within the Histone Methyltransferase G9a Regulates Protein Complex Assembly. Molecular Cell 27, 596-608 (2007). 
  25. Skrabanek, L., Murcia, M., Bouvier, M., Devi, L., George, S. R., Lohse, M. J., Milligan, G., Neubig, R., Palczewski, K., Parmentier, M., Pin, J. P., Vriend, G., Javitch, J. A., Campagne, F. & Filizola, M. Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base. BMC Bioinformatics 8, 177 (2007).
  26. Townson, S. A., Samuelson, J. C., Bao, Y., Xu, S. Y. & Aggarwal, A. K. BstYI bound to noncognate DNA reveals a "hemispecific" complex: implications for DNA scanning. Structure 15, 449-59 (2007).
  27. Vanamee, E. S., Berriman, J. & Aggarwal, A. K. An EM view of the FokI synaptic complex by single particle analysis. J Mol Biol 370, 207-12 (2007).
  28. Vink, M., Derr, K., Love, J., Stokes, D. L. & Ubarretxena-Belandia, I. A high-throughput strategy to screen 2D crystallization trials of membrane proteins. J Struct Biol 160, 295-304 (2007).
  29. Zhao, Q., Logothetis, D. E. & Seguela, P. Regulation of ATP-gated P2X receptors by phosphoinositides. Pflugers Arch 455, 181-5 (2007).